/** Created by dsotnikov on 2/25/2014. */
public class IncludeDstu2Test {
private static CloseableHttpClient ourClient;
private static final org.slf4j.Logger ourLog =
org.slf4j.LoggerFactory.getLogger(IncludeDstu2Test.class);
private static int ourPort;
private static Server ourServer;
private static FhirContext ourCtx;
@Test
public void testNoIncludes() throws Exception {
HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/Patient?name=Hello");
HttpResponse status = ourClient.execute(httpGet);
String responseContent = IOUtils.toString(status.getEntity().getContent());
IOUtils.closeQuietly(status.getEntity().getContent());
assertEquals(200, status.getStatusLine().getStatusCode());
Bundle bundle = ourCtx.newXmlParser().parseBundle(responseContent);
assertEquals(1, bundle.size());
Patient p = bundle.getResources(Patient.class).get(0);
assertEquals(0, p.getName().size());
assertEquals("Hello", p.getId().getIdPart());
}
@Test
public void testOneIncludeXml() throws Exception {
HttpGet httpGet =
new HttpGet("http://localhost:" + ourPort + "/Patient?name=Hello&_include=foo");
HttpResponse status = ourClient.execute(httpGet);
String responseContent = IOUtils.toString(status.getEntity().getContent());
IOUtils.closeQuietly(status.getEntity().getContent());
assertEquals(200, status.getStatusLine().getStatusCode());
ourLog.info(responseContent);
Bundle bundle = ourCtx.newXmlParser().parseBundle(responseContent);
assertEquals(1, bundle.size());
Patient p = bundle.getResources(Patient.class).get(0);
assertEquals(1, p.getName().size());
assertEquals("Hello", p.getId().getIdPart());
assertEquals("foo", p.getName().get(0).getFamilyFirstRep().getValue());
}
@Test
public void testOneIncludeJson() throws Exception {
HttpGet httpGet =
new HttpGet(
"http://localhost:" + ourPort + "/Patient?name=Hello&_include=foo&_format=json");
HttpResponse status = ourClient.execute(httpGet);
String responseContent = IOUtils.toString(status.getEntity().getContent());
IOUtils.closeQuietly(status.getEntity().getContent());
assertEquals(200, status.getStatusLine().getStatusCode());
ourLog.info(responseContent);
Bundle bundle = ourCtx.newJsonParser().parseBundle(responseContent);
assertEquals(1, bundle.size());
Patient p = bundle.getResources(Patient.class).get(0);
assertEquals(1, p.getName().size());
assertEquals("Hello", p.getId().getIdPart());
assertEquals("foo", p.getName().get(0).getFamilyFirstRep().getValue());
}
// @Test
public void testMixedContainedAndNonContained() throws Exception {
HttpGet httpGet =
new HttpGet(
"http://localhost:"
+ ourPort
+ "/DiagnosticReport?_query=stitchedInclude&_pretty=true");
HttpResponse status = ourClient.execute(httpGet);
String responseContent = IOUtils.toString(status.getEntity().getContent());
IOUtils.closeQuietly(status.getEntity().getContent());
ourLog.info(responseContent);
assertEquals(200, status.getStatusLine().getStatusCode());
Bundle bundle = ourCtx.newXmlParser().parseBundle(responseContent);
assertEquals(4, bundle.size());
}
@Test
public void testIIncludedResourcesNonContained() throws Exception {
HttpGet httpGet =
new HttpGet("http://localhost:" + ourPort + "/Patient?_query=normalInclude&_pretty=true");
HttpResponse status = ourClient.execute(httpGet);
String responseContent = IOUtils.toString(status.getEntity().getContent());
IOUtils.closeQuietly(status.getEntity().getContent());
assertEquals(200, status.getStatusLine().getStatusCode());
Bundle bundle = ourCtx.newXmlParser().parseBundle(responseContent);
ourLog.info(responseContent);
assertEquals(3, bundle.size());
assertEquals(
new IdDt("Patient/p1"),
bundle.toListOfResources().get(0).getId().toUnqualifiedVersionless());
assertEquals(
new IdDt("Patient/p2"),
bundle.toListOfResources().get(1).getId().toUnqualifiedVersionless());
assertEquals(
new IdDt("Organization/o1"),
bundle.toListOfResources().get(2).getId().toUnqualifiedVersionless());
assertEquals(
BundleEntrySearchModeEnum.INCLUDE,
bundle.getEntries().get(2).getSearchMode().getValueAsEnum());
Patient p1 = (Patient) bundle.toListOfResources().get(0);
assertEquals(0, p1.getContained().getContainedResources().size());
Patient p2 = (Patient) bundle.toListOfResources().get(1);
assertEquals(0, p2.getContained().getContainedResources().size());
}
@Test
public void testIIncludedResourcesNonContainedInExtension() throws Exception {
HttpGet httpGet =
new HttpGet("http://localhost:" + ourPort + "/Patient?_query=extInclude&_pretty=true");
HttpResponse status = ourClient.execute(httpGet);
String responseContent = IOUtils.toString(status.getEntity().getContent());
IOUtils.closeQuietly(status.getEntity().getContent());
assertEquals(200, status.getStatusLine().getStatusCode());
Bundle bundle = ourCtx.newXmlParser().parseBundle(responseContent);
ourLog.info(responseContent);
assertEquals(3, bundle.size());
assertEquals(
new IdDt("Patient/p1"),
bundle.toListOfResources().get(0).getId().toUnqualifiedVersionless());
assertEquals(
new IdDt("Patient/p2"),
bundle.toListOfResources().get(1).getId().toUnqualifiedVersionless());
assertEquals(
new IdDt("Organization/o1"),
bundle.toListOfResources().get(2).getId().toUnqualifiedVersionless());
assertEquals(
BundleEntrySearchModeEnum.INCLUDE,
bundle.getEntries().get(2).getSearchMode().getValueAsEnum());
Patient p1 = (Patient) bundle.toListOfResources().get(0);
assertEquals(0, p1.getContained().getContainedResources().size());
Patient p2 = (Patient) bundle.toListOfResources().get(1);
assertEquals(0, p2.getContained().getContainedResources().size());
}
@Test
public void testIIncludedResourcesNonContainedInExtensionJson() throws Exception {
HttpGet httpGet =
new HttpGet(
"http://localhost:" + ourPort + "/Patient?_query=extInclude&_pretty=true&_format=json");
HttpResponse status = ourClient.execute(httpGet);
String responseContent = IOUtils.toString(status.getEntity().getContent());
IOUtils.closeQuietly(status.getEntity().getContent());
assertEquals(200, status.getStatusLine().getStatusCode());
Bundle bundle = ourCtx.newJsonParser().parseBundle(responseContent);
ourLog.info(responseContent);
assertEquals(3, bundle.size());
assertEquals(
new IdDt("Patient/p1"),
bundle.toListOfResources().get(0).getId().toUnqualifiedVersionless());
assertEquals(
new IdDt("Patient/p2"),
bundle.toListOfResources().get(1).getId().toUnqualifiedVersionless());
assertEquals(
new IdDt("Organization/o1"),
bundle.toListOfResources().get(2).getId().toUnqualifiedVersionless());
assertEquals(
BundleEntrySearchModeEnum.INCLUDE,
bundle.getEntries().get(2).getSearchMode().getValueAsEnum());
Patient p1 = (Patient) bundle.toListOfResources().get(0);
assertEquals(0, p1.getContained().getContainedResources().size());
Patient p2 = (Patient) bundle.toListOfResources().get(1);
assertEquals(0, p2.getContained().getContainedResources().size());
}
@Test
public void testIIncludedResourcesNonContainedInDeclaredExtension() throws Exception {
HttpGet httpGet =
new HttpGet(
"http://localhost:" + ourPort + "/Patient?_query=declaredExtInclude&_pretty=true");
HttpResponse status = ourClient.execute(httpGet);
String responseContent = IOUtils.toString(status.getEntity().getContent());
IOUtils.closeQuietly(status.getEntity().getContent());
assertEquals(200, status.getStatusLine().getStatusCode());
Bundle bundle = ourCtx.newXmlParser().parseBundle(responseContent);
ourLog.info(responseContent);
assertEquals(4, bundle.size());
assertEquals(
new IdDt("Patient/p1"),
bundle.toListOfResources().get(0).getId().toUnqualifiedVersionless());
assertEquals(
new IdDt("Patient/p2"),
bundle.toListOfResources().get(1).getId().toUnqualifiedVersionless());
assertEquals(
new IdDt("Organization/o1"),
bundle.toListOfResources().get(2).getId().toUnqualifiedVersionless());
assertEquals(
new IdDt("Organization/o2"),
bundle.toListOfResources().get(3).getId().toUnqualifiedVersionless());
assertEquals(
BundleEntrySearchModeEnum.INCLUDE,
bundle.getEntries().get(2).getSearchMode().getValueAsEnum());
assertEquals(
BundleEntrySearchModeEnum.INCLUDE,
bundle.getEntries().get(3).getSearchMode().getValueAsEnum());
Patient p1 = (Patient) bundle.toListOfResources().get(0);
assertEquals(0, p1.getContained().getContainedResources().size());
Patient p2 = (Patient) bundle.toListOfResources().get(1);
assertEquals(0, p2.getContained().getContainedResources().size());
}
@Test
public void testTwoInclude() throws Exception {
HttpGet httpGet =
new HttpGet(
"http://localhost:"
+ ourPort
+ "/Patient?name=Hello&_include=foo&_include=bar&_pretty=true");
HttpResponse status = ourClient.execute(httpGet);
String responseContent = IOUtils.toString(status.getEntity().getContent());
IOUtils.closeQuietly(status.getEntity().getContent());
ourLog.info(responseContent);
assertEquals(200, status.getStatusLine().getStatusCode());
Bundle bundle = ourCtx.newXmlParser().parseBundle(responseContent);
assertEquals(1, bundle.size());
Patient p = bundle.getResources(Patient.class).get(0);
assertEquals(2, p.getName().size());
assertEquals("Hello", p.getId().getIdPart());
Set<String> values = new HashSet<String>();
values.add(p.getName().get(0).getFamilyFirstRep().getValue());
values.add(p.getName().get(1).getFamilyFirstRep().getValue());
assertThat(values, containsInAnyOrder("foo", "bar"));
}
@Test
public void testBadInclude() throws Exception {
HttpGet httpGet =
new HttpGet(
"http://localhost:" + ourPort + "/Patient?name=Hello&_include=foo&_include=baz");
HttpResponse status = ourClient.execute(httpGet);
assertEquals(400, status.getStatusLine().getStatusCode());
}
@AfterClass
public static void afterClass() throws Exception {
ourServer.stop();
}
@BeforeClass
public static void beforeClass() throws Exception {
ourCtx = FhirContext.forDstu2();
ourPort = PortUtil.findFreePort();
ourServer = new Server(ourPort);
DummyPatientResourceProvider patientProvider = new DummyPatientResourceProvider();
ServletHandler proxyHandler = new ServletHandler();
RestfulServer servlet = new RestfulServer(ourCtx);
servlet.setResourceProviders(patientProvider, new DummyDiagnosticReportResourceProvider());
servlet.setBundleInclusionRule(BundleInclusionRule.BASED_ON_RESOURCE_PRESENCE);
ServletHolder servletHolder = new ServletHolder(servlet);
proxyHandler.addServletWithMapping(servletHolder, "/*");
ourServer.setHandler(proxyHandler);
ourServer.start();
PoolingHttpClientConnectionManager connectionManager =
new PoolingHttpClientConnectionManager(5000, TimeUnit.MILLISECONDS);
HttpClientBuilder builder = HttpClientBuilder.create();
builder.setConnectionManager(connectionManager);
ourClient = builder.build();
}
@ResourceDef(name = "Patient")
public static class ExtPatient extends Patient {
@Child(name = "secondOrg")
@Extension(url = "http://foo#secondOrg", definedLocally = false, isModifier = false)
private ResourceReferenceDt mySecondOrg;
@Override
public boolean isEmpty() {
return super.isEmpty() && ElementUtil.isEmpty(mySecondOrg);
}
public ResourceReferenceDt getSecondOrg() {
if (mySecondOrg == null) {
mySecondOrg = new ResourceReferenceDt();
}
return mySecondOrg;
}
public void setSecondOrg(ResourceReferenceDt theSecondOrg) {
mySecondOrg = theSecondOrg;
}
}
/** Created by dsotnikov on 2/25/2014. */
public static class DummyDiagnosticReportResourceProvider implements IResourceProvider {
@Override
public Class<? extends IResource> getResourceType() {
return DiagnosticReport.class;
}
@Search(queryName = "stitchedInclude")
public List<DiagnosticReport> stitchedInclude() {
Practitioner pr1 = new Practitioner();
pr1.setId("Practitioner/001");
pr1.getName().addFamily("Pract1");
Practitioner pr2 = new Practitioner();
pr2.setId("Practitioner/002");
pr2.getName().addFamily("Pract2");
Practitioner pr3 = new Practitioner();
pr3.setId("Practitioner/003");
pr3.getName().addFamily("Pract3");
Observation o1 = new Observation();
o1.getCode().setText("Obs1");
o1.addPerformer().setResource(pr1);
Observation o2 = new Observation();
o2.getCode().setText("Obs2");
o2.addPerformer().setResource(pr2);
Observation o3 = new Observation();
o3.getCode().setText("Obs3");
o3.addPerformer().setResource(pr3);
DiagnosticReport rep = new DiagnosticReport();
rep.setId("DiagnosticReport/999");
rep.getName().setText("Rep");
rep.addResult().setResource(o1);
rep.addResult().setResource(o2);
rep.addResult().setResource(o3);
return Collections.singletonList(rep);
}
}
/** Created by dsotnikov on 2/25/2014. */
public static class DummyPatientResourceProvider implements IResourceProvider {
@Search(queryName = "normalInclude")
public List<Patient> normalInclude() {
Organization o1 = new Organization();
o1.getNameElement().setValue("o1");
o1.setId("o1");
Patient p1 = new Patient();
p1.setId("p1");
p1.addIdentifier().setValue("p1");
p1.getManagingOrganization().setResource(o1);
Patient p2 = new Patient();
p2.setId("p2");
p2.addIdentifier().setValue("p2");
p2.getManagingOrganization().setResource(o1);
return Arrays.asList(p1, p2);
}
@Search(queryName = "extInclude")
public List<Patient> extInclude() {
Organization o1 = new Organization();
o1.getNameElement().setValue("o1");
o1.setId("o1");
Patient p1 = new Patient();
p1.setId("p1");
p1.addIdentifier().setValue("p1");
p1.addUndeclaredExtension(false, "http://foo", new ResourceReferenceDt(o1));
Patient p2 = new Patient();
p2.setId("p2");
p2.addIdentifier().setValue("p2");
p2.addUndeclaredExtension(false, "http://foo", new ResourceReferenceDt(o1));
return Arrays.asList(p1, p2);
}
@Search(queryName = "declaredExtInclude")
public List<ExtPatient> declaredExtInclude() {
Organization o1 = new Organization();
o1.getNameElement().setValue("o1");
o1.setId("o1");
Organization o2 = new Organization();
o2.getNameElement().setValue("o2");
o2.setId("o2");
o1.getPartOf().setResource(o2);
ExtPatient p1 = new ExtPatient();
p1.setId("p1");
p1.addIdentifier().setValue("p1");
p1.getSecondOrg().setResource(o1);
ExtPatient p2 = new ExtPatient();
p2.setId("p2");
p2.addIdentifier().setValue("p2");
p2.getSecondOrg().setResource(o1);
return Arrays.asList(p1, p2);
}
@Search(queryName = "containedInclude")
public List<Patient> containedInclude() {
Organization o1 = new Organization();
o1.getNameElement().setValue("o1");
Patient p1 = new Patient();
p1.setId("p1");
p1.addIdentifier().setValue("p1");
p1.getManagingOrganization().setResource(o1);
Patient p2 = new Patient();
p2.setId("p2");
p2.addIdentifier().setValue("p2");
p2.getManagingOrganization().setResource(o1);
return Arrays.asList(p1, p2);
}
@Search
public List<Patient> findPatient(
@RequiredParam(name = Patient.SP_NAME) StringDt theName,
@IncludeParam(allow = {"foo", "bar"}) Set<Include> theIncludes) {
ArrayList<Patient> retVal = new ArrayList<Patient>();
Patient p = new Patient();
p.addIdentifier().setSystem("foo").setValue("bar");
p.setId(theName.getValue());
if (theIncludes != null) {
for (Include next : theIncludes) {
p.addName().addFamily().setValue(next.getValue());
}
}
retVal.add(p);
return retVal;
}
@Override
public Class<? extends IResource> getResourceType() {
return Patient.class;
}
}
}
public class ElementsParamTest {
private static CloseableHttpClient ourClient;
private static FhirContext ourCtx = FhirContext.forDstu2();
private static Set<String> ourLastElements;
private static final org.slf4j.Logger ourLog =
org.slf4j.LoggerFactory.getLogger(ElementsParamTest.class);
private static int ourPort;
private static Server ourServer;
@Before
public void before() {
ourLastElements = null;
}
@Test
public void testReadSummaryData() throws Exception {
HttpGet httpGet =
new HttpGet("http://localhost:" + ourPort + "/Patient/1?_elements=name,maritalStatus");
HttpResponse status = ourClient.execute(httpGet);
String responseContent = IOUtils.toString(status.getEntity().getContent());
IOUtils.closeQuietly(status.getEntity().getContent());
ourLog.info(responseContent);
assertEquals(200, status.getStatusLine().getStatusCode());
assertEquals(
Constants.CT_FHIR_XML + Constants.CHARSET_UTF8_CTSUFFIX.replace(" ", "").toLowerCase(),
status.getEntity().getContentType().getValue().replace(" ", "").replace("UTF", "utf"));
assertThat(responseContent, not(containsString("<Bundle")));
assertThat(responseContent, (containsString("<Patien")));
assertThat(responseContent, not(containsString("<div>THE DIV</div>")));
assertThat(responseContent, (containsString("family")));
assertThat(responseContent, (containsString("maritalStatus")));
assertThat(ourLastElements, containsInAnyOrder("name", "maritalStatus"));
}
@Test
public void testReadSummaryTrue() throws Exception {
HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/Patient/1?_elements=name");
HttpResponse status = ourClient.execute(httpGet);
String responseContent = IOUtils.toString(status.getEntity().getContent());
IOUtils.closeQuietly(status.getEntity().getContent());
ourLog.info(responseContent);
assertEquals(200, status.getStatusLine().getStatusCode());
assertEquals(
Constants.CT_FHIR_XML + Constants.CHARSET_UTF8_CTSUFFIX.replace(" ", "").toLowerCase(),
status.getEntity().getContentType().getValue().replace(" ", "").replace("UTF", "utf"));
assertThat(responseContent, not(containsString("<Bundle")));
assertThat(responseContent, (containsString("<Patien")));
assertThat(responseContent, not(containsString("<div>THE DIV</div>")));
assertThat(responseContent, (containsString("family")));
assertThat(responseContent, not(containsString("maritalStatus")));
assertThat(ourLastElements, containsInAnyOrder("name"));
}
@Test
public void testSearchSummaryData() throws Exception {
HttpGet httpGet =
new HttpGet("http://localhost:" + ourPort + "/Patient?_elements=name,maritalStatus");
HttpResponse status = ourClient.execute(httpGet);
String responseContent = IOUtils.toString(status.getEntity().getContent());
IOUtils.closeQuietly(status.getEntity().getContent());
ourLog.info(responseContent);
assertEquals(200, status.getStatusLine().getStatusCode());
assertThat(responseContent, containsString("<Patient"));
assertThat(responseContent, not(containsString("THE DIV")));
assertThat(responseContent, containsString("family"));
assertThat(responseContent, containsString("maritalStatus"));
assertThat(ourLastElements, containsInAnyOrder("name", "maritalStatus"));
}
@Test
public void testSearchSummaryText() throws Exception {
HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/Patient?_elements=text");
HttpResponse status = ourClient.execute(httpGet);
String responseContent = IOUtils.toString(status.getEntity().getContent());
IOUtils.closeQuietly(status.getEntity().getContent());
ourLog.info(responseContent);
assertEquals(200, status.getStatusLine().getStatusCode());
assertThat(responseContent, (containsString("<total value=\"1\"/>")));
assertThat(responseContent, (containsString("entry")));
assertThat(responseContent, (containsString("THE DIV")));
assertThat(responseContent, not(containsString("family")));
assertThat(responseContent, not(containsString("maritalStatus")));
assertThat(ourLastElements, containsInAnyOrder("text"));
}
@AfterClass
public static void afterClassClearContext() throws Exception {
ourServer.stop();
TestUtil.clearAllStaticFieldsForUnitTest();
}
@BeforeClass
public static void beforeClass() throws Exception {
ourPort = PortUtil.findFreePort();
ourServer = new Server(ourPort);
DummyPatientResourceProvider patientProvider = new DummyPatientResourceProvider();
ServletHandler proxyHandler = new ServletHandler();
RestfulServer servlet = new RestfulServer(ourCtx);
servlet.setResourceProviders(patientProvider);
ServletHolder servletHolder = new ServletHolder(servlet);
proxyHandler.addServletWithMapping(servletHolder, "/*");
ourServer.setHandler(proxyHandler);
ourServer.start();
PoolingHttpClientConnectionManager connectionManager =
new PoolingHttpClientConnectionManager(5000, TimeUnit.MILLISECONDS);
HttpClientBuilder builder = HttpClientBuilder.create();
builder.setConnectionManager(connectionManager);
ourClient = builder.build();
}
public static class DummyPatientResourceProvider implements IResourceProvider {
@Override
public Class<? extends IResource> getResourceType() {
return Patient.class;
}
@Read
public Patient read(@IdParam IdDt theId, @Elements Set<String> theElements) {
ourLastElements = theElements;
Patient patient = new Patient();
patient.setId("Patient/1/_history/1");
patient.getText().setDiv("<div>THE DIV</div>");
patient.addName().addFamily("FAMILY");
patient.setMaritalStatus(MaritalStatusCodesEnum.D);
return patient;
}
@Search()
public Patient search(@Elements Set<String> theElements) {
ourLastElements = theElements;
Patient patient = new Patient();
patient.setId("Patient/1/_history/1");
patient.getText().setDiv("<div>THE DIV</div>");
patient.addName().addFamily("FAMILY");
patient.setMaritalStatus(MaritalStatusCodesEnum.D);
return patient;
}
}
}