@Override
public void endElement(String elx, String localName, String el) throws SAXException {
if ("IonScore".equals(el)) {
IonScoreHandler handler = (IonScoreHandler) getHandler().popCurrentHandler();
m_IonScore.set(handler.getElementObject());
return;
}
if ("ProteinPosition".equals(el)) {
ProteinPositionHandler handler = (ProteinPositionHandler) getHandler().popCurrentHandler();
m_Positions.add(handler.getElementObject());
return;
}
if ("usage".equals(el)) {
String txt = getIncludedText();
m_Usage = SpectralPeakUsage.deserializeUsage(txt);
return;
}
super.endElement(elx, localName, el);
}
/**
* Receive notification of the start of an element.
*
* <p>
*
* <p>By default, do nothing. Application writers may override this method in a subclass to take
* specific actions at the start of each element (such as allocating a new tree node or writing
* output to a file).
*
* @param uri The Namespace URI, or the empty string if the element has no Namespace URI or if
* Namespace processing is not being performed.
* @param localName The local name (without prefix), or the empty string if Namespace processing
* is not being performed.
* @param el The qualified name (with prefix), or the empty string if qualified names are not
* available.
* @param attributes The attributes attached to the element. If there are no attributes, it shall
* be an empty Attributes object.
* @throws org.xml.sax.SAXException Any SAX exception, possibly wrapping another exception.
* @see org.xml.sax.ContentHandler#startElement
*/
@Override
public void startElement(String uri, String localName, String el, Attributes attributes)
throws SAXException {
if ("IonScore".equals(el)) {
IonScoreHandler handler = new IonScoreHandler(this);
getHandler().pushCurrentHandler(handler);
handler.handleAttributes(uri, localName, el, attributes);
return;
}
if ("ProteinPosition".equals(el)) {
ProteinPositionHandler handler = new ProteinPositionHandler(this, m_Peptide);
getHandler().pushCurrentHandler(handler);
handler.handleAttributes(uri, localName, el, attributes);
return;
}
if ("usage".equals(el)) {
clearIncludedText();
return;
}
super.startElement(uri, localName, el, attributes);
}