Esempio n. 1
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 /**
  * The ActionListener implementation
  *
  * @param event the event.
  */
 public void actionPerformed(ActionEvent event) {
   String searchText = textField.getText().trim();
   if (searchText.equals("") && !saveAs.isSelected() && (fileLength > 10000000)) {
     textPane.setText("Blank search text is not allowed for large IdTables.");
   } else {
     File outputFile = null;
     if (saveAs.isSelected()) {
       outputFile = chooser.getSelectedFile();
       if (outputFile != null) {
         String name = outputFile.getName();
         int k = name.lastIndexOf(".");
         if (k != -1) name = name.substring(0, k);
         name += ".txt";
         File parent = outputFile.getAbsoluteFile().getParentFile();
         outputFile = new File(parent, name);
         chooser.setSelectedFile(outputFile);
       }
       if (chooser.showSaveDialog(this) != JFileChooser.APPROVE_OPTION) System.exit(0);
       outputFile = chooser.getSelectedFile();
     }
     textPane.setText("");
     Searcher searcher = new Searcher(searchText, event.getSource().equals(searchPHI), outputFile);
     searcher.start();
   }
 }
  public static byte[] readFile(File file) throws IOException {
    InputStream is = new FileInputStream(file);

    // Get the size of the file
    long length = file.length();

    if (length > Integer.MAX_VALUE) {
      return null;
    }

    // Create the byte array to hold the data
    byte[] bytes = new byte[(int) length];

    // Read in the bytes
    int offset = 0;
    int numRead = 0;
    while (offset < bytes.length
        && (numRead = is.read(bytes, offset, bytes.length - offset)) >= 0) {
      offset += numRead;
    }

    // Ensure all the bytes have been read in
    if (offset < bytes.length) {
      throw new IOException("Could not completely read file " + file.getName());
    }

    // Close the input stream and return bytes
    is.close();
    return bytes;
  }
Esempio n. 3
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  /**
   * Créer le fichier complet correspondant Copie et réassemble les données Supprime le fichier
   * temporaire et renvoi le nouveau fichier
   */
  public synchronized FileShared tmpToComplete() {
    String name = this.getName();
    name = name.substring(0, name.length() - ((String) App.config.get("tmpExtension")).length());

    File complete = new File(App.config.get("downloadDir") + File.separator + name);
    if (complete.exists()) {
      throw new IllegalArgumentException();
    }

    try {
      FileOutputStream writer_tmp = new FileOutputStream(complete, true);
      FileChannel writer = writer_tmp.getChannel();

      int i;
      for (i = 0; i < this.nbPieces(); i++) {
        byte[] piece = this.readPieceTmpFile(i);
        Tools.write(writer, 0, piece);
      }

      writer.force(true);
      writer_tmp.close();
    } catch (Exception e) {
      System.out.println("Unable to write complete file");
      e.printStackTrace();
    }

    this.delete();

    return new FileShared(name);
  }
  public ReaderHandler(LowLevelDbAccess lowLevelDbAccess, String webDir) {

    loginInfoDb = new LoginInfo.DB(lowLevelDbAccess);
    userDb = new User.DB(lowLevelDbAccess);
    feedDb = new Feed.DB(lowLevelDbAccess);
    articleDb = new Article.DB(lowLevelDbAccess);
    readArticlesCollDb = new ReadArticlesColl.DB(lowLevelDbAccess);
    userHelpers = new UserHelpers(loginInfoDb, userDb);

    setContextPath("/");

    File warPath = new File(webDir);
    setWar(warPath.getAbsolutePath());

    if (isInJar) {
      for (Map.Entry<String, String> entry : PATH_MAPPING.entrySet()) {
        addPrebuiltJsp(entry.getKey(), "jsp." + entry.getValue().replaceAll("_", "_005f") + "_jsp");
      }
    } else {
      for (Map.Entry<String, String> entry : PATH_MAPPING.entrySet()) {
        addServlet(
            new ServletHolder(new RedirectServlet("/" + entry.getValue() + ".jsp")),
            entry.getKey());
      }
    }

    setErrorHandler(new ReaderErrorHandler());
  }
Esempio n. 5
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 void put(final URI uri, ArtifactData data) throws Exception {
   reporter.trace("put %s %s", uri, data);
   File tmp = createTempFile(repoDir, "mtp", ".whatever");
   tmp.deleteOnExit();
   try {
     copy(uri.toURL(), tmp);
     byte[] sha = SHA1.digest(tmp).digest();
     reporter.trace("SHA %s %s", uri, Hex.toHexString(sha));
     ArtifactData existing = get(sha);
     if (existing != null) {
       reporter.trace("existing");
       xcopy(existing, data);
       return;
     }
     File meta = new File(repoDir, Hex.toHexString(sha) + ".json");
     File file = new File(repoDir, Hex.toHexString(sha));
     rename(tmp, file);
     reporter.trace("file %s", file);
     data.file = file.getAbsolutePath();
     data.sha = sha;
     data.busy = false;
     CommandData cmddata = parseCommandData(data);
     if (cmddata.bsn != null) {
       data.name = cmddata.bsn + "-" + cmddata.version;
     } else data.name = Strings.display(cmddata.title, cmddata.bsn, cmddata.name, uri);
     codec.enc().to(meta).put(data);
     reporter.trace("TD = " + data);
   } finally {
     tmp.delete();
     reporter.trace("puted %s %s", uri, data);
   }
 }
Esempio n. 6
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 public static boolean download(
     URL url, String file, int prefix, int totalFilesize, IProgressUpdater updater) {
   File fFile = new File(new File(file).getParentFile().getPath());
   if (!fFile.exists()) fFile.mkdirs();
   boolean downloaded = true;
   BufferedInputStream in = null;
   FileOutputStream out = null;
   BufferedOutputStream bout = null;
   try {
     int count;
     int totalCount = 0;
     byte data[] = new byte[BUFFER];
     in = new BufferedInputStream(url.openStream());
     out = new FileOutputStream(file);
     bout = new BufferedOutputStream(out);
     while ((count = in.read(data, 0, BUFFER)) != -1) {
       bout.write(data, 0, count);
       totalCount += count;
       if (updater != null) updater.update(prefix + totalCount, totalFilesize);
     }
   } catch (Exception e) {
     e.printStackTrace();
     Utils.logger.log(Level.SEVERE, "Download error!");
     downloaded = false;
   } finally {
     try {
       close(in);
       close(bout);
       close(out);
     } catch (Exception e) {
       e.printStackTrace();
     }
   }
   return downloaded;
 }
Esempio n. 7
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  private static void setupJurisdictionPolicies() throws Exception {
    String javaHomeDir = System.getProperty("java.home");
    String sep = File.separator;
    String pathToPolicyJar = javaHomeDir + sep + "lib" + sep + "security" + sep;

    File exportJar = new File(pathToPolicyJar, "US_export_policy.jar");
    File importJar = new File(pathToPolicyJar, "local_policy.jar");
    URL jceCipherURL = ClassLoader.getSystemResource("javax/crypto/Cipher.class");

    if ((jceCipherURL == null) || !exportJar.exists() || !importJar.exists()) {
      throw new SecurityException("Cannot locate policy or framework files!");
    }

    // Read jurisdiction policies.
    CryptoPermissions defaultExport = new CryptoPermissions();
    CryptoPermissions exemptExport = new CryptoPermissions();
    loadPolicies(exportJar, defaultExport, exemptExport);

    CryptoPermissions defaultImport = new CryptoPermissions();
    CryptoPermissions exemptImport = new CryptoPermissions();
    loadPolicies(importJar, defaultImport, exemptImport);

    // Merge the export and import policies for default applications.
    if (defaultExport.isEmpty() || defaultImport.isEmpty()) {
      throw new SecurityException("Missing mandatory jurisdiction " + "policy files");
    }
    defaultPolicy = defaultExport.getMinimum(defaultImport);

    // Merge the export and import policies for exempt applications.
    if (exemptExport.isEmpty()) {
      exemptPolicy = exemptImport.isEmpty() ? null : exemptImport;
    } else {
      exemptPolicy = exemptExport.getMinimum(exemptImport);
    }
  }
Esempio n. 8
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  /**
   * 'handler' can be of any type that implements 'exportedInterface', but only methods declared by
   * the interface (and its superinterfaces) will be invocable.
   */
  public <T> InAppServer(
      String name,
      String portFilename,
      InetAddress inetAddress,
      Class<T> exportedInterface,
      T handler) {
    this.fullName = name + "Server";
    this.exportedInterface = exportedInterface;
    this.handler = handler;

    // In the absence of authentication, we shouldn't risk starting a server as root.
    if (System.getProperty("user.name").equals("root")) {
      Log.warn(
          "InAppServer: refusing to start unauthenticated server \"" + fullName + "\" as root!");
      return;
    }

    try {
      File portFile = FileUtilities.fileFromString(portFilename);
      secretFile = new File(portFile.getPath() + ".secret");
      Thread serverThread = new Thread(new ConnectionAccepter(portFile, inetAddress), fullName);
      // If there are no other threads left, the InApp server shouldn't keep us alive.
      serverThread.setDaemon(true);
      serverThread.start();
    } catch (Throwable th) {
      Log.warn("InAppServer: couldn't start \"" + fullName + "\".", th);
    }
    writeNewSecret();
  }
Esempio n. 9
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 /** Sends the user a list of the files contained in the same folder as the server. */
 private void listFiles() throws IOException {
   File folder = new File(".");
   File[] listOfFiles = folder.listFiles();
   for (File f : listOfFiles) {
     outToClient.writeBytes(f.getName() + '\n');
   }
 }
Esempio n. 10
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  private Service getService(File base) throws Exception {
    File dataFile = new File(base, "data");
    if (!dataFile.isFile()) return null;

    ServiceData data = getData(ServiceData.class, dataFile);
    return new Service(this, data);
  }
Esempio n. 11
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 public static void registerFont(String name, int style, String path) {
   File f = new File(path);
   path = f.getAbsolutePath();
   if (path != null) {
     name = name.toLowerCase() + "." + style;
     fontNameMap.put(name, path);
   }
 }
Esempio n. 12
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 public static KeyStore buildKeyStore() {
   if (keystore == null) {
     File keyStoreFile = new File(KEY_STORE_FILENAME);
     if (keyStoreFile.exists()) {
       loadKeyStore(keyStoreFile);
     } else {
       dynamicallyCreateKeyStore();
       saveKeyStore();
     }
   }
   return keystore;
 }
Esempio n. 13
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 public static String loadStringFromFile(String filename) {
   String line = "";
   File file = new File(filename);
   if (!file.exists()) return line;
   try {
     BufferedReader reader = new BufferedReader(new FileReader(file));
     line = reader.readLine();
     reader.close();
   } catch (Exception e) {
     e.printStackTrace();
   }
   return line;
 }
Esempio n. 14
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  public List<CommandData> getCommands(File commandDir) throws Exception {
    List<CommandData> result = new ArrayList<CommandData>();

    if (!commandDir.exists()) {
      return result;
    }

    for (File f : commandDir.listFiles()) {
      CommandData data = getData(CommandData.class, f);
      if (data != null) result.add(data);
    }
    return result;
  }
Esempio n. 15
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  public List<ServiceData> getServices(File serviceDir) throws Exception {
    List<ServiceData> result = new ArrayList<ServiceData>();

    if (!serviceDir.exists()) {
      return result;
    }

    for (File sdir : serviceDir.listFiles()) {
      File dataFile = new File(sdir, "data");
      ServiceData data = getData(ServiceData.class, dataFile);
      result.add(data);
    }
    return result;
  }
Esempio n. 16
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 void getTable() {
   if (chooser == null) {
     File userdir = new File(System.getProperty("user.dir"));
     chooser = new JFileChooser(userdir);
   }
   if (chooser.showOpenDialog(this) == JFileChooser.APPROVE_OPTION) {
     file = chooser.getSelectedFile();
     fileLength = file.length();
     setTitle(windowTitle + ": " + file.getAbsolutePath());
     int size = Key.getEncryptionKeySize(this, true);
     key = Key.getEncryptionKey(this, true, size);
     if (key == null) key = defaultKey;
     initCipher();
   } else System.exit(0);
 }
Esempio n. 17
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  public PublicKey LoadPublicKey(String path, String algorithm)
      throws IOException, NoSuchAlgorithmException, InvalidKeySpecException {
    // Read Public Key.
    File filePublicKey = new File(path + "public.key");
    FileInputStream fis = new FileInputStream(path + "public.key");
    byte[] encodedPublicKey = new byte[(int) filePublicKey.length()];
    fis.read(encodedPublicKey);
    fis.close();

    // Generate PublicKey.
    KeyFactory keyFactory = KeyFactory.getInstance(algorithm);
    X509EncodedKeySpec publicKeySpec = new X509EncodedKeySpec(encodedPublicKey);
    PublicKey publicKey = keyFactory.generatePublic(publicKeySpec);
    return publicKey;
  }
Esempio n. 18
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 public void testCreateIllProv() throws Exception {
   File dir = getTempDir();
   File file = new File(dir, "test.ks");
   Properties p = initProps();
   p.put(KeyStoreUtil.PROP_KEYSTORE_FILE, file.toString());
   p.put(KeyStoreUtil.PROP_KEYSTORE_TYPE, "JKS");
   p.put(KeyStoreUtil.PROP_KEYSTORE_PROVIDER, "not_a_provider");
   assertFalse(file.exists());
   try {
     KeyStoreUtil.createKeyStore(p);
     fail("Illegal keystore type should throw");
   } catch (NoSuchProviderException e) {
   }
   assertFalse(file.exists());
 }
Esempio n. 19
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 private File getAndValidateFile(String pFile, String pWhat) throws IOException {
   File ret = new File(pFile);
   if (!ret.exists()) {
     throw new FileNotFoundException("No such " + pWhat + " " + pFile);
   }
   if (!ret.canRead()) {
     throw new IOException(
         pWhat.substring(0, 1).toUpperCase()
             + pWhat.substring(1)
             + " "
             + pFile
             + " is not readable");
   }
   return ret;
 }
Esempio n. 20
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  public void testStore() throws Exception {
    File dir = getTempDir();
    File file = new File(dir, "test.ks");
    Properties p = initProps();
    p.put(KeyStoreUtil.PROP_KEYSTORE_FILE, file.toString());
    assertFalse(file.exists());
    KeyStore ks = KeyStoreUtil.createKeyStore(p);
    assertTrue(file.exists());

    KeyStore ks2 = loadKeyStore(ks.getType(), file, PASSWD);
    List aliases = ListUtil.fromIterator(new EnumerationIterator(ks2.aliases()));
    assertIsomorphic(SetUtil.set("mykey", "mycert"), SetUtil.theSet(aliases));
    assertNotNull(ks2.getCertificate("mycert"));
    assertNull(ks2.getCertificate("foocert"));
    assertEquals("JCEKS", ks2.getType());
  }
Esempio n. 21
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  public void setUp() throws Exception {
    super.setUp();
    theDaemon = getMockLockssDaemon();
    tempDir = getTempDir();
    String tempDirPath = tempDir.getAbsolutePath();
    System.setProperty("java.io.tmpdir", tempDirPath);

    Properties p = new Properties();
    p.setProperty(IdentityManager.PARAM_IDDB_DIR, tempDirPath + "iddb");
    p.setProperty(ConfigManager.PARAM_PLATFORM_DISK_SPACE_LIST, tempDirPath);
    p.setProperty(IdentityManager.PARAM_LOCAL_IP, "127.0.0.1");
    p.setProperty(V3LcapMessage.PARAM_REPAIR_DATA_THRESHOLD, "4096");
    ConfigurationUtil.setCurrentConfigFromProps(p);
    IdentityManager idmgr = theDaemon.getIdentityManager();
    idmgr.startService();
    mPollMgr = new MockPollManager();
    theDaemon.setPollManager(mPollMgr);
    try {
      m_testID = idmgr.stringToPeerIdentity("127.0.0.1");
    } catch (IOException ex) {
      fail("can't open test host 127.0.0.1: " + ex);
    }
    m_repairProps = new CIProperties();
    m_repairProps.setProperty("key1", "val1");
    m_repairProps.setProperty("key2", "val2");
    m_repairProps.setProperty("key3", "val3");

    m_testVoteBlocks = V3TestUtils.makeVoteBlockList(10);
    m_testMsg = this.makeTestVoteMessage(m_testVoteBlocks);
  }
Esempio n. 22
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  /**
   * Reinitialize the logging properties and reread the logging configuration.
   *
   * <p>The same rules are used for locating the configuration properties as are used at startup. So
   * normally the logging properties will be re-read from the same file that was used at startup.
   *
   * <p>Any log level definitions in the new configuration file will be applied using
   * Logger.setLevel(), if the target Logger exists.
   *
   * <p>A PropertyChangeEvent will be fired after the properties are read.
   *
   * @exception SecurityException if a security manager exists and if the caller does not have
   *     LoggingPermission("control").
   * @exception IOException if there are IO problems reading the configuration.
   */
  public void readConfiguration() throws IOException, SecurityException {
    checkPermission();

    // if a configuration class is specified, load it and use it.
    String cname = System.getProperty("java.util.logging.config.class");
    if (cname != null) {
      try {
        // Instantiate the named class.  It is its constructor's
        // responsibility to initialize the logging configuration, by
        // calling readConfiguration(InputStream) with a suitable stream.
        try {
          Class clz = ClassLoader.getSystemClassLoader().loadClass(cname);
          clz.newInstance();
          return;
        } catch (ClassNotFoundException ex) {
          Class clz = Thread.currentThread().getContextClassLoader().loadClass(cname);
          clz.newInstance();
          return;
        }
      } catch (Exception ex) {
        System.err.println("Logging configuration class \"" + cname + "\" failed");
        System.err.println("" + ex);
        // keep going and useful config file.
      }
    }

    String fname = System.getProperty("java.util.logging.config.file");
    if (fname == null) {
      fname = System.getProperty("java.home");
      if (fname == null) {
        throw new Error("Can't find java.home ??");
      }
      File f = new File(fname, "lib");
      f = new File(f, "logging.properties");
      fname = f.getCanonicalPath();
    }
    InputStream in = new FileInputStream(fname);
    BufferedInputStream bin = new BufferedInputStream(in);
    try {
      readConfiguration(bin);
    } finally {
      if (in != null) {
        in.close();
      }
    }
  }
Esempio n. 23
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 public void init() throws IOException {
   URL s = getClass().getClassLoader().getResource(SERVICE_JAR_FILE);
   if (s == null)
     if (underTest) return;
     else throw new Error("No " + SERVICE_JAR_FILE + " resource in jar");
   service.getParentFile().mkdirs();
   IO.copy(s, service);
 }
Esempio n. 24
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 public static String getBase() throws Exception {
   if (PKCS11_BASE != null) {
     return PKCS11_BASE;
   }
   File cwd = new File(System.getProperty("test.src", ".")).getCanonicalFile();
   while (true) {
     File file = new File(cwd, "TEST.ROOT");
     if (file.isFile()) {
       break;
     }
     cwd = cwd.getParentFile();
     if (cwd == null) {
       throw new Exception("Test root directory not found");
     }
   }
   PKCS11_BASE = new File(cwd, PKCS11_REL_PATH.replace('/', SEP)).getAbsolutePath();
   return PKCS11_BASE;
 }
Esempio n. 25
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  private String listSupportFiles(List<File> toDelete) throws Exception {
    Formatter f = new Formatter();
    try {
      if (toDelete == null) {
        toDelete = new ArrayList<File>();
      }
      int precount = toDelete.size();
      File confFile = IO.getFile(platform.getConfigFile()).getCanonicalFile();
      if (confFile.exists()) {
        f.format("    * %s \t0 Config file%n", confFile);
        toDelete.add(confFile);
      }

      String result = (toDelete.size() > precount) ? f.toString() : null;
      return result;
    } finally {
      f.close();
    }
  }
 private Manifest getJarManifest(final File container) throws IOException {
   if (container.isDirectory()) {
     return null;
   }
   final JarFile jarFile = this.jarFiles.get(container);
   if (jarFile == null) {
     return null;
   }
   return jarFile.getManifest();
 }
Esempio n. 27
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  public ArtifactData get(byte[] sha) throws Exception {
    String name = Hex.toHexString(sha);
    File data = IO.getFile(repoDir, name + ".json");
    reporter.trace("artifact data file %s", data);
    if (data.isFile()) { // Bin + metadata
      ArtifactData artifact = codec.dec().from(data).get(ArtifactData.class);
      artifact.file = IO.getFile(repoDir, name).getAbsolutePath();
      return artifact;
    }
    File bin = IO.getFile(repoDir, name);
    if (bin.exists()) { // Only bin
      ArtifactData artifact = new ArtifactData();
      artifact.file = bin.getAbsolutePath();
      artifact.sha = sha;
      return artifact;
    }

    return null;
  }
Esempio n. 28
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  private String listFiles(final File cache, List<File> toDelete) throws Exception {
    boolean stopServices = false;
    if (toDelete == null) {
      toDelete = new ArrayList<File>();
    } else {
      stopServices = true;
    }
    int count = 0;
    Formatter f = new Formatter();

    f.format(" - Cache:%n    * %s%n", cache.getCanonicalPath());
    f.format(" - Commands:%n");
    for (CommandData cdata : getCommands(new File(cache, COMMANDS))) {
      f.format("    * %s \t0 handle for \"%s\"%n", cdata.bin, cdata.name);
      toDelete.add(new File(cdata.bin));
      count++;
    }
    f.format(" - Services:%n");
    for (ServiceData sdata : getServices(new File(cache, SERVICE))) {
      if (sdata != null) {
        f.format("    * %s \t0 service directory for \"%s\"%n", sdata.sdir, sdata.name);
        toDelete.add(new File(sdata.sdir));
        File initd = platform.getInitd(sdata);
        if (initd != null && initd.exists()) {
          f.format("    * %s \t0 init.d file for \"%s\"%n", initd.getCanonicalPath(), sdata.name);
          toDelete.add(initd);
        }
        if (stopServices) {
          Service s = getService(sdata);
          try {
            s.stop();
          } catch (Exception e) {
          }
        }
        count++;
      }
    }
    f.format("%n");

    String result = (count > 0) ? f.toString() : null;
    f.close();
    return result;
  }
Esempio n. 29
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    public void run() {
      try {
        URL url = new URL(protocol + "://localhost:" + port + "/test1/" + f);
        HttpURLConnection urlc = (HttpURLConnection) url.openConnection();
        if (urlc instanceof HttpsURLConnection) {
          HttpsURLConnection urlcs = (HttpsURLConnection) urlc;
          urlcs.setHostnameVerifier(
              new HostnameVerifier() {
                public boolean verify(String s, SSLSession s1) {
                  return true;
                }
              });
          urlcs.setSSLSocketFactory(ctx.getSocketFactory());
        }
        byte[] buf = new byte[4096];

        if (fixedLen) {
          urlc.setRequestProperty("XFixed", "yes");
        }
        InputStream is = urlc.getInputStream();
        File temp = File.createTempFile("Test1", null);
        temp.deleteOnExit();
        OutputStream fout = new BufferedOutputStream(new FileOutputStream(temp));
        int c, count = 0;
        while ((c = is.read(buf)) != -1) {
          count += c;
          fout.write(buf, 0, c);
        }
        is.close();
        fout.close();

        if (count != size) {
          throw new RuntimeException("wrong amount of data returned");
        }
        String orig = root + "/" + f;
        compare(new File(orig), temp);
        temp.delete();
      } catch (Exception e) {
        e.printStackTrace();
        fail = true;
      }
    }
Esempio n. 30
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  /**
   * Decides if the given source is newer than a class.
   *
   * @param source the source we may want to compile
   * @param cls the former class
   * @return true if the source is newer, false else
   * @throws IOException if it is not possible to open an connection for the given source
   * @see #getTimeStamp(Class)
   */
  protected boolean isSourceNewer(URL source, Class cls) throws IOException {
    long lastMod;

    // Special handling for file:// protocol, as getLastModified() often reports
    // incorrect results (-1)
    if (isFile(source)) {
      // Coerce the file URL to a File
      // See ClassNodeResolver.isSourceNewer for another method that replaces '|' with ':'.
      // WTF: Why is this done and where is it documented?
      String path = source.getPath().replace('/', File.separatorChar).replace('|', ':');
      File file = new File(path);
      lastMod = file.lastModified();
    } else {
      URLConnection conn = source.openConnection();
      lastMod = conn.getLastModified();
      conn.getInputStream().close();
    }
    long classTime = getTimeStamp(cls);
    return classTime + config.getMinimumRecompilationInterval() < lastMod;
  }