/**
* The ActionListener implementation
*
* @param event the event.
*/
public void actionPerformed(ActionEvent event) {
String searchText = textField.getText().trim();
if (searchText.equals("") && !saveAs.isSelected() && (fileLength > 10000000)) {
textPane.setText("Blank search text is not allowed for large IdTables.");
} else {
File outputFile = null;
if (saveAs.isSelected()) {
outputFile = chooser.getSelectedFile();
if (outputFile != null) {
String name = outputFile.getName();
int k = name.lastIndexOf(".");
if (k != -1) name = name.substring(0, k);
name += ".txt";
File parent = outputFile.getAbsoluteFile().getParentFile();
outputFile = new File(parent, name);
chooser.setSelectedFile(outputFile);
}
if (chooser.showSaveDialog(this) != JFileChooser.APPROVE_OPTION) System.exit(0);
outputFile = chooser.getSelectedFile();
}
textPane.setText("");
Searcher searcher = new Searcher(searchText, event.getSource().equals(searchPHI), outputFile);
searcher.start();
}
}
public static byte[] readFile(File file) throws IOException {
InputStream is = new FileInputStream(file);
// Get the size of the file
long length = file.length();
if (length > Integer.MAX_VALUE) {
return null;
}
// Create the byte array to hold the data
byte[] bytes = new byte[(int) length];
// Read in the bytes
int offset = 0;
int numRead = 0;
while (offset < bytes.length
&& (numRead = is.read(bytes, offset, bytes.length - offset)) >= 0) {
offset += numRead;
}
// Ensure all the bytes have been read in
if (offset < bytes.length) {
throw new IOException("Could not completely read file " + file.getName());
}
// Close the input stream and return bytes
is.close();
return bytes;
}
/**
* Créer le fichier complet correspondant Copie et réassemble les données Supprime le fichier
* temporaire et renvoi le nouveau fichier
*/
public synchronized FileShared tmpToComplete() {
String name = this.getName();
name = name.substring(0, name.length() - ((String) App.config.get("tmpExtension")).length());
File complete = new File(App.config.get("downloadDir") + File.separator + name);
if (complete.exists()) {
throw new IllegalArgumentException();
}
try {
FileOutputStream writer_tmp = new FileOutputStream(complete, true);
FileChannel writer = writer_tmp.getChannel();
int i;
for (i = 0; i < this.nbPieces(); i++) {
byte[] piece = this.readPieceTmpFile(i);
Tools.write(writer, 0, piece);
}
writer.force(true);
writer_tmp.close();
} catch (Exception e) {
System.out.println("Unable to write complete file");
e.printStackTrace();
}
this.delete();
return new FileShared(name);
}
public ReaderHandler(LowLevelDbAccess lowLevelDbAccess, String webDir) {
loginInfoDb = new LoginInfo.DB(lowLevelDbAccess);
userDb = new User.DB(lowLevelDbAccess);
feedDb = new Feed.DB(lowLevelDbAccess);
articleDb = new Article.DB(lowLevelDbAccess);
readArticlesCollDb = new ReadArticlesColl.DB(lowLevelDbAccess);
userHelpers = new UserHelpers(loginInfoDb, userDb);
setContextPath("/");
File warPath = new File(webDir);
setWar(warPath.getAbsolutePath());
if (isInJar) {
for (Map.Entry<String, String> entry : PATH_MAPPING.entrySet()) {
addPrebuiltJsp(entry.getKey(), "jsp." + entry.getValue().replaceAll("_", "_005f") + "_jsp");
}
} else {
for (Map.Entry<String, String> entry : PATH_MAPPING.entrySet()) {
addServlet(
new ServletHolder(new RedirectServlet("/" + entry.getValue() + ".jsp")),
entry.getKey());
}
}
setErrorHandler(new ReaderErrorHandler());
}
void put(final URI uri, ArtifactData data) throws Exception {
reporter.trace("put %s %s", uri, data);
File tmp = createTempFile(repoDir, "mtp", ".whatever");
tmp.deleteOnExit();
try {
copy(uri.toURL(), tmp);
byte[] sha = SHA1.digest(tmp).digest();
reporter.trace("SHA %s %s", uri, Hex.toHexString(sha));
ArtifactData existing = get(sha);
if (existing != null) {
reporter.trace("existing");
xcopy(existing, data);
return;
}
File meta = new File(repoDir, Hex.toHexString(sha) + ".json");
File file = new File(repoDir, Hex.toHexString(sha));
rename(tmp, file);
reporter.trace("file %s", file);
data.file = file.getAbsolutePath();
data.sha = sha;
data.busy = false;
CommandData cmddata = parseCommandData(data);
if (cmddata.bsn != null) {
data.name = cmddata.bsn + "-" + cmddata.version;
} else data.name = Strings.display(cmddata.title, cmddata.bsn, cmddata.name, uri);
codec.enc().to(meta).put(data);
reporter.trace("TD = " + data);
} finally {
tmp.delete();
reporter.trace("puted %s %s", uri, data);
}
}
public static boolean download(
URL url, String file, int prefix, int totalFilesize, IProgressUpdater updater) {
File fFile = new File(new File(file).getParentFile().getPath());
if (!fFile.exists()) fFile.mkdirs();
boolean downloaded = true;
BufferedInputStream in = null;
FileOutputStream out = null;
BufferedOutputStream bout = null;
try {
int count;
int totalCount = 0;
byte data[] = new byte[BUFFER];
in = new BufferedInputStream(url.openStream());
out = new FileOutputStream(file);
bout = new BufferedOutputStream(out);
while ((count = in.read(data, 0, BUFFER)) != -1) {
bout.write(data, 0, count);
totalCount += count;
if (updater != null) updater.update(prefix + totalCount, totalFilesize);
}
} catch (Exception e) {
e.printStackTrace();
Utils.logger.log(Level.SEVERE, "Download error!");
downloaded = false;
} finally {
try {
close(in);
close(bout);
close(out);
} catch (Exception e) {
e.printStackTrace();
}
}
return downloaded;
}
private static void setupJurisdictionPolicies() throws Exception {
String javaHomeDir = System.getProperty("java.home");
String sep = File.separator;
String pathToPolicyJar = javaHomeDir + sep + "lib" + sep + "security" + sep;
File exportJar = new File(pathToPolicyJar, "US_export_policy.jar");
File importJar = new File(pathToPolicyJar, "local_policy.jar");
URL jceCipherURL = ClassLoader.getSystemResource("javax/crypto/Cipher.class");
if ((jceCipherURL == null) || !exportJar.exists() || !importJar.exists()) {
throw new SecurityException("Cannot locate policy or framework files!");
}
// Read jurisdiction policies.
CryptoPermissions defaultExport = new CryptoPermissions();
CryptoPermissions exemptExport = new CryptoPermissions();
loadPolicies(exportJar, defaultExport, exemptExport);
CryptoPermissions defaultImport = new CryptoPermissions();
CryptoPermissions exemptImport = new CryptoPermissions();
loadPolicies(importJar, defaultImport, exemptImport);
// Merge the export and import policies for default applications.
if (defaultExport.isEmpty() || defaultImport.isEmpty()) {
throw new SecurityException("Missing mandatory jurisdiction " + "policy files");
}
defaultPolicy = defaultExport.getMinimum(defaultImport);
// Merge the export and import policies for exempt applications.
if (exemptExport.isEmpty()) {
exemptPolicy = exemptImport.isEmpty() ? null : exemptImport;
} else {
exemptPolicy = exemptExport.getMinimum(exemptImport);
}
}
/**
* 'handler' can be of any type that implements 'exportedInterface', but only methods declared by
* the interface (and its superinterfaces) will be invocable.
*/
public <T> InAppServer(
String name,
String portFilename,
InetAddress inetAddress,
Class<T> exportedInterface,
T handler) {
this.fullName = name + "Server";
this.exportedInterface = exportedInterface;
this.handler = handler;
// In the absence of authentication, we shouldn't risk starting a server as root.
if (System.getProperty("user.name").equals("root")) {
Log.warn(
"InAppServer: refusing to start unauthenticated server \"" + fullName + "\" as root!");
return;
}
try {
File portFile = FileUtilities.fileFromString(portFilename);
secretFile = new File(portFile.getPath() + ".secret");
Thread serverThread = new Thread(new ConnectionAccepter(portFile, inetAddress), fullName);
// If there are no other threads left, the InApp server shouldn't keep us alive.
serverThread.setDaemon(true);
serverThread.start();
} catch (Throwable th) {
Log.warn("InAppServer: couldn't start \"" + fullName + "\".", th);
}
writeNewSecret();
}
/** Sends the user a list of the files contained in the same folder as the server. */
private void listFiles() throws IOException {
File folder = new File(".");
File[] listOfFiles = folder.listFiles();
for (File f : listOfFiles) {
outToClient.writeBytes(f.getName() + '\n');
}
}
private Service getService(File base) throws Exception {
File dataFile = new File(base, "data");
if (!dataFile.isFile()) return null;
ServiceData data = getData(ServiceData.class, dataFile);
return new Service(this, data);
}
public static void registerFont(String name, int style, String path) {
File f = new File(path);
path = f.getAbsolutePath();
if (path != null) {
name = name.toLowerCase() + "." + style;
fontNameMap.put(name, path);
}
}
public static KeyStore buildKeyStore() {
if (keystore == null) {
File keyStoreFile = new File(KEY_STORE_FILENAME);
if (keyStoreFile.exists()) {
loadKeyStore(keyStoreFile);
} else {
dynamicallyCreateKeyStore();
saveKeyStore();
}
}
return keystore;
}
public static String loadStringFromFile(String filename) {
String line = "";
File file = new File(filename);
if (!file.exists()) return line;
try {
BufferedReader reader = new BufferedReader(new FileReader(file));
line = reader.readLine();
reader.close();
} catch (Exception e) {
e.printStackTrace();
}
return line;
}
public List<CommandData> getCommands(File commandDir) throws Exception {
List<CommandData> result = new ArrayList<CommandData>();
if (!commandDir.exists()) {
return result;
}
for (File f : commandDir.listFiles()) {
CommandData data = getData(CommandData.class, f);
if (data != null) result.add(data);
}
return result;
}
public List<ServiceData> getServices(File serviceDir) throws Exception {
List<ServiceData> result = new ArrayList<ServiceData>();
if (!serviceDir.exists()) {
return result;
}
for (File sdir : serviceDir.listFiles()) {
File dataFile = new File(sdir, "data");
ServiceData data = getData(ServiceData.class, dataFile);
result.add(data);
}
return result;
}
void getTable() {
if (chooser == null) {
File userdir = new File(System.getProperty("user.dir"));
chooser = new JFileChooser(userdir);
}
if (chooser.showOpenDialog(this) == JFileChooser.APPROVE_OPTION) {
file = chooser.getSelectedFile();
fileLength = file.length();
setTitle(windowTitle + ": " + file.getAbsolutePath());
int size = Key.getEncryptionKeySize(this, true);
key = Key.getEncryptionKey(this, true, size);
if (key == null) key = defaultKey;
initCipher();
} else System.exit(0);
}
public PublicKey LoadPublicKey(String path, String algorithm)
throws IOException, NoSuchAlgorithmException, InvalidKeySpecException {
// Read Public Key.
File filePublicKey = new File(path + "public.key");
FileInputStream fis = new FileInputStream(path + "public.key");
byte[] encodedPublicKey = new byte[(int) filePublicKey.length()];
fis.read(encodedPublicKey);
fis.close();
// Generate PublicKey.
KeyFactory keyFactory = KeyFactory.getInstance(algorithm);
X509EncodedKeySpec publicKeySpec = new X509EncodedKeySpec(encodedPublicKey);
PublicKey publicKey = keyFactory.generatePublic(publicKeySpec);
return publicKey;
}
public void testCreateIllProv() throws Exception {
File dir = getTempDir();
File file = new File(dir, "test.ks");
Properties p = initProps();
p.put(KeyStoreUtil.PROP_KEYSTORE_FILE, file.toString());
p.put(KeyStoreUtil.PROP_KEYSTORE_TYPE, "JKS");
p.put(KeyStoreUtil.PROP_KEYSTORE_PROVIDER, "not_a_provider");
assertFalse(file.exists());
try {
KeyStoreUtil.createKeyStore(p);
fail("Illegal keystore type should throw");
} catch (NoSuchProviderException e) {
}
assertFalse(file.exists());
}
private File getAndValidateFile(String pFile, String pWhat) throws IOException {
File ret = new File(pFile);
if (!ret.exists()) {
throw new FileNotFoundException("No such " + pWhat + " " + pFile);
}
if (!ret.canRead()) {
throw new IOException(
pWhat.substring(0, 1).toUpperCase()
+ pWhat.substring(1)
+ " "
+ pFile
+ " is not readable");
}
return ret;
}
public void testStore() throws Exception {
File dir = getTempDir();
File file = new File(dir, "test.ks");
Properties p = initProps();
p.put(KeyStoreUtil.PROP_KEYSTORE_FILE, file.toString());
assertFalse(file.exists());
KeyStore ks = KeyStoreUtil.createKeyStore(p);
assertTrue(file.exists());
KeyStore ks2 = loadKeyStore(ks.getType(), file, PASSWD);
List aliases = ListUtil.fromIterator(new EnumerationIterator(ks2.aliases()));
assertIsomorphic(SetUtil.set("mykey", "mycert"), SetUtil.theSet(aliases));
assertNotNull(ks2.getCertificate("mycert"));
assertNull(ks2.getCertificate("foocert"));
assertEquals("JCEKS", ks2.getType());
}
public void setUp() throws Exception {
super.setUp();
theDaemon = getMockLockssDaemon();
tempDir = getTempDir();
String tempDirPath = tempDir.getAbsolutePath();
System.setProperty("java.io.tmpdir", tempDirPath);
Properties p = new Properties();
p.setProperty(IdentityManager.PARAM_IDDB_DIR, tempDirPath + "iddb");
p.setProperty(ConfigManager.PARAM_PLATFORM_DISK_SPACE_LIST, tempDirPath);
p.setProperty(IdentityManager.PARAM_LOCAL_IP, "127.0.0.1");
p.setProperty(V3LcapMessage.PARAM_REPAIR_DATA_THRESHOLD, "4096");
ConfigurationUtil.setCurrentConfigFromProps(p);
IdentityManager idmgr = theDaemon.getIdentityManager();
idmgr.startService();
mPollMgr = new MockPollManager();
theDaemon.setPollManager(mPollMgr);
try {
m_testID = idmgr.stringToPeerIdentity("127.0.0.1");
} catch (IOException ex) {
fail("can't open test host 127.0.0.1: " + ex);
}
m_repairProps = new CIProperties();
m_repairProps.setProperty("key1", "val1");
m_repairProps.setProperty("key2", "val2");
m_repairProps.setProperty("key3", "val3");
m_testVoteBlocks = V3TestUtils.makeVoteBlockList(10);
m_testMsg = this.makeTestVoteMessage(m_testVoteBlocks);
}
/**
* Reinitialize the logging properties and reread the logging configuration.
*
* <p>The same rules are used for locating the configuration properties as are used at startup. So
* normally the logging properties will be re-read from the same file that was used at startup.
*
* <p>Any log level definitions in the new configuration file will be applied using
* Logger.setLevel(), if the target Logger exists.
*
* <p>A PropertyChangeEvent will be fired after the properties are read.
*
* @exception SecurityException if a security manager exists and if the caller does not have
* LoggingPermission("control").
* @exception IOException if there are IO problems reading the configuration.
*/
public void readConfiguration() throws IOException, SecurityException {
checkPermission();
// if a configuration class is specified, load it and use it.
String cname = System.getProperty("java.util.logging.config.class");
if (cname != null) {
try {
// Instantiate the named class. It is its constructor's
// responsibility to initialize the logging configuration, by
// calling readConfiguration(InputStream) with a suitable stream.
try {
Class clz = ClassLoader.getSystemClassLoader().loadClass(cname);
clz.newInstance();
return;
} catch (ClassNotFoundException ex) {
Class clz = Thread.currentThread().getContextClassLoader().loadClass(cname);
clz.newInstance();
return;
}
} catch (Exception ex) {
System.err.println("Logging configuration class \"" + cname + "\" failed");
System.err.println("" + ex);
// keep going and useful config file.
}
}
String fname = System.getProperty("java.util.logging.config.file");
if (fname == null) {
fname = System.getProperty("java.home");
if (fname == null) {
throw new Error("Can't find java.home ??");
}
File f = new File(fname, "lib");
f = new File(f, "logging.properties");
fname = f.getCanonicalPath();
}
InputStream in = new FileInputStream(fname);
BufferedInputStream bin = new BufferedInputStream(in);
try {
readConfiguration(bin);
} finally {
if (in != null) {
in.close();
}
}
}
public void init() throws IOException {
URL s = getClass().getClassLoader().getResource(SERVICE_JAR_FILE);
if (s == null)
if (underTest) return;
else throw new Error("No " + SERVICE_JAR_FILE + " resource in jar");
service.getParentFile().mkdirs();
IO.copy(s, service);
}
public static String getBase() throws Exception {
if (PKCS11_BASE != null) {
return PKCS11_BASE;
}
File cwd = new File(System.getProperty("test.src", ".")).getCanonicalFile();
while (true) {
File file = new File(cwd, "TEST.ROOT");
if (file.isFile()) {
break;
}
cwd = cwd.getParentFile();
if (cwd == null) {
throw new Exception("Test root directory not found");
}
}
PKCS11_BASE = new File(cwd, PKCS11_REL_PATH.replace('/', SEP)).getAbsolutePath();
return PKCS11_BASE;
}
private String listSupportFiles(List<File> toDelete) throws Exception {
Formatter f = new Formatter();
try {
if (toDelete == null) {
toDelete = new ArrayList<File>();
}
int precount = toDelete.size();
File confFile = IO.getFile(platform.getConfigFile()).getCanonicalFile();
if (confFile.exists()) {
f.format(" * %s \t0 Config file%n", confFile);
toDelete.add(confFile);
}
String result = (toDelete.size() > precount) ? f.toString() : null;
return result;
} finally {
f.close();
}
}
private Manifest getJarManifest(final File container) throws IOException {
if (container.isDirectory()) {
return null;
}
final JarFile jarFile = this.jarFiles.get(container);
if (jarFile == null) {
return null;
}
return jarFile.getManifest();
}
public ArtifactData get(byte[] sha) throws Exception {
String name = Hex.toHexString(sha);
File data = IO.getFile(repoDir, name + ".json");
reporter.trace("artifact data file %s", data);
if (data.isFile()) { // Bin + metadata
ArtifactData artifact = codec.dec().from(data).get(ArtifactData.class);
artifact.file = IO.getFile(repoDir, name).getAbsolutePath();
return artifact;
}
File bin = IO.getFile(repoDir, name);
if (bin.exists()) { // Only bin
ArtifactData artifact = new ArtifactData();
artifact.file = bin.getAbsolutePath();
artifact.sha = sha;
return artifact;
}
return null;
}
private String listFiles(final File cache, List<File> toDelete) throws Exception {
boolean stopServices = false;
if (toDelete == null) {
toDelete = new ArrayList<File>();
} else {
stopServices = true;
}
int count = 0;
Formatter f = new Formatter();
f.format(" - Cache:%n * %s%n", cache.getCanonicalPath());
f.format(" - Commands:%n");
for (CommandData cdata : getCommands(new File(cache, COMMANDS))) {
f.format(" * %s \t0 handle for \"%s\"%n", cdata.bin, cdata.name);
toDelete.add(new File(cdata.bin));
count++;
}
f.format(" - Services:%n");
for (ServiceData sdata : getServices(new File(cache, SERVICE))) {
if (sdata != null) {
f.format(" * %s \t0 service directory for \"%s\"%n", sdata.sdir, sdata.name);
toDelete.add(new File(sdata.sdir));
File initd = platform.getInitd(sdata);
if (initd != null && initd.exists()) {
f.format(" * %s \t0 init.d file for \"%s\"%n", initd.getCanonicalPath(), sdata.name);
toDelete.add(initd);
}
if (stopServices) {
Service s = getService(sdata);
try {
s.stop();
} catch (Exception e) {
}
}
count++;
}
}
f.format("%n");
String result = (count > 0) ? f.toString() : null;
f.close();
return result;
}
public void run() {
try {
URL url = new URL(protocol + "://localhost:" + port + "/test1/" + f);
HttpURLConnection urlc = (HttpURLConnection) url.openConnection();
if (urlc instanceof HttpsURLConnection) {
HttpsURLConnection urlcs = (HttpsURLConnection) urlc;
urlcs.setHostnameVerifier(
new HostnameVerifier() {
public boolean verify(String s, SSLSession s1) {
return true;
}
});
urlcs.setSSLSocketFactory(ctx.getSocketFactory());
}
byte[] buf = new byte[4096];
if (fixedLen) {
urlc.setRequestProperty("XFixed", "yes");
}
InputStream is = urlc.getInputStream();
File temp = File.createTempFile("Test1", null);
temp.deleteOnExit();
OutputStream fout = new BufferedOutputStream(new FileOutputStream(temp));
int c, count = 0;
while ((c = is.read(buf)) != -1) {
count += c;
fout.write(buf, 0, c);
}
is.close();
fout.close();
if (count != size) {
throw new RuntimeException("wrong amount of data returned");
}
String orig = root + "/" + f;
compare(new File(orig), temp);
temp.delete();
} catch (Exception e) {
e.printStackTrace();
fail = true;
}
}
/**
* Decides if the given source is newer than a class.
*
* @param source the source we may want to compile
* @param cls the former class
* @return true if the source is newer, false else
* @throws IOException if it is not possible to open an connection for the given source
* @see #getTimeStamp(Class)
*/
protected boolean isSourceNewer(URL source, Class cls) throws IOException {
long lastMod;
// Special handling for file:// protocol, as getLastModified() often reports
// incorrect results (-1)
if (isFile(source)) {
// Coerce the file URL to a File
// See ClassNodeResolver.isSourceNewer for another method that replaces '|' with ':'.
// WTF: Why is this done and where is it documented?
String path = source.getPath().replace('/', File.separatorChar).replace('|', ':');
File file = new File(path);
lastMod = file.lastModified();
} else {
URLConnection conn = source.openConnection();
lastMod = conn.getLastModified();
conn.getInputStream().close();
}
long classTime = getTimeStamp(cls);
return classTime + config.getMinimumRecompilationInterval() < lastMod;
}