/** initialize tertiary structure view */ private void initTertiaryView() { Group models3D = new Group(); rnaSequence3D = new RNASequence(model.getPdbfile()); if (tertiaryRoom == null) { tertiaryRoom = new Room(models3D, 50, 50); tertiaryRoom.rotateCamera(tertiaryRoom); tertiaryRoom.scaleCamera(scene); tertiaryRoom.alignToParent(pane3D); tertiaryRoom.setPickOnBounds(false); pane3D.getChildren().add(tertiaryRoom); } else { tertiaryRoom.setObject(rnaSequence3D); } if (reloadItem.isSelected()) loadOneModel(0); if (!reloadItem.isSelected()) loadAllmodels(); ((MeshModel) rnaSequence3D.getModels().get(1)).colorPyrPur(); rnaSequence3D.setSelectionModel(selectionModel); tertiaryRoom.setCameraCenter(rnaSequence3D.computeCenter()); activateRightSideButtons(); }