public ListSingleSelection<String> getTargetColumns(CyNetwork network) {
CyTable selectedTable = network.getTable(CyNode.class, CyRootNetwork.SHARED_ATTRS);
List<String> colNames = new ArrayList<String>();
for (CyColumn col : selectedTable.getColumns()) {
// Exclude SUID from the mapping key list
if (col.getName().equalsIgnoreCase("SUID")) {
continue;
}
colNames.add(col.getName());
}
ListSingleSelection<String> columns = new ListSingleSelection<String>(colNames);
// columns.setSelectedValue("shared name"); this does not work, why
return columns;
}
protected final Set<CyNetwork> getNetworksByQuery(final String query, final String column) {
final Set<CyNetwork> networks = networkManager.getNetworkSet();
final Set<CyNetwork> matchedNetworks = new HashSet<>();
for (final CyNetwork network : networks) {
// First, check shared table
CyTable table = network.getDefaultNetworkTable();
if (table.getColumn(column) == null) {
table = network.getTable(CyNetwork.class, CyNetwork.LOCAL_ATTRS);
}
// If column does not exists in the default table, check local one:
if (table.getColumn(column) == null) {
// Still not found? Give up and continue.
// TODO: should we check hidden tables, too?
continue;
}
final Object rawQuery = MapperUtil.getRawValue(query, table.getColumn(column).getType());
final Collection<CyRow> rows = table.getMatchingRows(column, rawQuery);
if (rows.isEmpty() == false) {
matchedNetworks.add(network);
}
}
return matchedNetworks;
}
