/** Will fail if it doesn't find the specified interaction. */
protected void findInteraction(
CyNetwork net, String source, String target, String interaction, int count) {
for (CyNode n : net.getNodeList()) {
String sname = net.getRow(n).get(CyNetwork.NAME, String.class);
assertNotNull("Source name is NULL", sname);
if (source.equals(sname)) {
List<CyNode> neigh = net.getNeighborList(n, CyEdge.Type.ANY);
assertEquals("wrong number of neighbors", count, neigh.size());
for (CyNode nn : neigh) {
String tname = net.getRow(nn).get(CyNetwork.NAME, String.class);
assertNotNull("Target name is NULL", tname);
if (tname.equals(target)) {
List<CyEdge> con = net.getConnectingEdgeList(n, nn, CyEdge.Type.ANY);
assertTrue("Connecting edge list is empty", con.size() > 0);
for (CyEdge e : con) {
String inter = net.getRow(e).get(CyEdge.INTERACTION, String.class);
assertNotNull("Edge interaction is NULL", inter);
if (inter.equals(interaction)) {
return;
}
}
}
}
}
}
fail("couldn't find interaction: " + source + " " + interaction + " " + target);
}
