/** Test default package versions. */
public static void testDefaultPackageVersion() throws Exception {
Builder a = new Builder();
a.addClasspath(new File("bin"));
a.setProperty("Bundle-Version", "1.2.3");
a.setProperty("Export-Package", "test.refer");
Jar jar = a.build();
Manifest m = jar.getManifest();
Parameters exports =
Processor.parseHeader(m.getMainAttributes().getValue(Constants.EXPORT_PACKAGE), null);
Map<String, String> attrs = exports.get("test.refer");
assertNotNull(attrs);
assertEquals("1.2.3", attrs.get("version"));
}
public void train(int[] instanceLengths, String trainfile, File train_forest) throws IOException {
// System.out.print("About to train. ");
// System.out.print("Num Feats: " + pipe.dataAlphabet.size());
int i = 0;
for (i = 0; i < options.numIters; i++) {
System.out.print(" Iteration " + i);
// System.out.println("========================");
// System.out.println("Iteration: " + i);
// System.out.println("========================");
System.out.print("[");
long start = System.currentTimeMillis();
trainingIter(instanceLengths, trainfile, train_forest, i + 1);
long end = System.currentTimeMillis();
// System.out.println("Training iter took: " + (end-start));
System.out.println("|Time:" + (end - start) + "]");
}
params.averageParams(i * instanceLengths.length);
}
public void train(int[] instanceLengths, int[] ignore, String trainfile, File train_forest)
throws IOException {
int i = 0;
for (i = 0; i < options.numIters; i++) {
System.out.print(" Iteration " + i);
System.out.print("[");
long start = System.currentTimeMillis();
trainingIter(instanceLengths, ignore, trainfile, train_forest, i + 1);
long end = System.currentTimeMillis();
// System.out.println("Training iter took: " + (end-start));
System.out.println("|Time:" + (end - start) + "]");
}
params.averageParams(i * countActualInstances(ignore));
// afm 06-04-08
if (options.separateLab) {
LabelClassifier oc =
new LabelClassifier(
options, instanceLengths, ignore, trainfile, train_forest, this, pipe);
try {
classifier = oc.trainClassifier(100);
} catch (Exception e) {
e.printStackTrace();
}
}
}
@Override
public void render(Parameters blockParameters, Writer w, RenderHints hints)
throws FrameworkException {
log.debug("Error rendering " + blockParameters);
switch (getType()) {
case BODY:
try {
decorateIntro(hints, w, "error");
w.write("<h1>" + error.status);
w.write(": ");
CharTransformer escape = new Xml(Xml.ESCAPE);
w.write(escape.transform(error.exception.getMessage()));
w.write(" ");
w.write(escape.transform(url));
w.write("</h1>");
w.write("<pre>");
HttpServletRequest request = blockParameters.get(Parameter.REQUEST);
error.getErrorReport(w, request, escape);
w.write("</pre>");
decorateOutro(hints, w);
} catch (IOException eio) {
throw new FrameworkException(eio.getMessage(), eio);
}
break;
default:
}
}
/** Prints the classifier. */
public void print() {
System.out.print(" Act: " + action + " Conf: ");
for (int i = 0; i < rep.length; i++) {
rep[i].print();
}
if (parameters != null) parameters.print();
} // end print
public void actionPerformed(ActionEvent e) {
String defaultHost = Parameters.getParameter("telnet.defaultHost", "localhost");
String hostname = JOptionPane.showInputDialog(Edit.getFrame(), "Hostname:", defaultHost);
if (hostname != null) {
Edit.openFile("telnet://" + hostname);
}
}
/**
* Prints the classifier to the specified file.
*
* @param fout is the file output where the classifier has to be printed.
*/
public void print(PrintWriter fout) {
fout.print(" ");
for (int i = 0; i < rep.length; i++) {
rep[i].print(fout);
}
fout.print(" " + action + " ");
if (parameters != null) parameters.print(fout);
}
public void loadModel(String file) throws Exception {
ObjectInputStream in = new ObjectInputStream(new FileInputStream(file));
params.parameters = (double[]) in.readObject();
pipe.dataAlphabet = (Alphabet) in.readObject();
pipe.typeAlphabet = (Alphabet) in.readObject();
in.close();
pipe.closeAlphabets();
}
/**
* Test if the implementation of "AnnotatedProviderInterface", which is annotated with OSGi
* R6 @ProviderType, causes import of the api package to use the provider version policy
*/
public static void testProviderTypeR6() throws Exception {
Builder b = new Builder();
b.addClasspath(new File("bin"));
b.setPrivatePackage("test.versionpolicy.implemented.osgi");
b.setProperty("build", "123");
Jar jar = b.build();
assertTrue(b.check());
Manifest m = jar.getManifest();
m.write(System.err);
Domain d = Domain.domain(m);
Parameters params = d.getImportPackage();
Attrs attrs = params.get("test.version.annotations.osgi");
assertNotNull(attrs);
assertEquals("[1.2,1.3)", attrs.get("version"));
}
/**
* Tests if the implementation of the EventHandler (which is marked as a ConsumerType) causes the
* import of the api package to use the consumer version policy.
*/
public static void testConsumerType() throws Exception {
Builder a = new Builder();
a.addClasspath(new File("bin"));
a.setPrivatePackage("test.versionpolicy.uses");
a.setExportPackage("test.versionpolicy.api");
a.setProperty("build", "123");
Jar jar = a.build();
assertTrue(a.check());
Manifest m = jar.getManifest();
m.write(System.err);
Domain d = Domain.domain(m);
Parameters parameters = d.getImportPackage();
Attrs attrs = parameters.get("test.versionpolicy.api");
assertNotNull(attrs);
assertEquals("[1.2,2)", attrs.get("version"));
}
@SuppressWarnings("unchecked")
protected void setBlockParametersForRender(State state, Parameters blockParameters) {
ServletRequest request = state.getRequest();
String prefix = getPrefix(state);
log.debug("prefix " + prefix);
blockParameters.setAutoCasting(true);
for (Map.Entry<String, String[]> entry :
((Map<String, String[]>) request.getParameterMap()).entrySet()) {
String key = entry.getKey();
if (key.startsWith(prefix)) {
log.trace("setting" + entry);
blockParameters.setIfDefined(key.substring(prefix.length()), entry.getValue());
}
}
if (log.isDebugEnabled()) {
log.debug("Set " + blockParameters);
}
}
@Override
public String getProcessUrl(
String path, Map<String, ?> parameters, Parameters frameworkParameters, boolean escapeAmps)
throws FrameworkException {
HttpServletRequest request =
BasicUrlConverter.getUserRequest(frameworkParameters.get(Parameter.REQUEST));
State state = State.getState(request);
frameworkParameters.set(ACTION, state.getId());
Url url = urlConverter.getProcessUrl(path, parameters, frameworkParameters, escapeAmps);
if (url == Url.NOT) {
log.debug("Fall back url");
return fallbackConverter
.getProcessUrl(path, parameters, frameworkParameters, escapeAmps)
.getUrl();
} else {
log.debug("Url converter url " + url);
return url.getUrl();
}
}
/**
* I think in the basic framework this method is never called explicitely, because processing is
* done implicitly by the render
*/
@Override
public void process(
Processor processor, Parameters blockParameters, Parameters frameworkParameters)
throws FrameworkException {
HttpServletRequest request = frameworkParameters.get(Parameter.REQUEST);
State state = State.getState(request);
state.startBlock(frameworkParameters, null);
setBlockParametersForProcess(state, blockParameters);
processor.process(blockParameters);
}
@Override
public Block getRenderingBlock(Parameters frameworkParameters) {
HttpServletRequest request = frameworkParameters.get(Parameter.REQUEST);
State state = State.getState(request);
if (state.isRendering()) {
return state.getBlock();
} else {
return null;
}
}
/**
* Returns if the classifier of the class subsumes the classifier passed as a parameter.
*
* @param cl is the subsumed classifier.
* @return a boolean indicating if it subsumes
*/
public boolean doesSubsume(Classifier cl) {
if (rep.getAction() != cl.rep.getAction()) return false;
if (parameters.couldSubsume()) {
if (rep.isMoreGeneral(cl.rep)) {
return true;
}
}
return false;
} // end doesSubsume
/**
* Tests if the implementation of the EventAdmin (which is marked as a ProviderType) causes the
* import of the api package to use the provider version policy.
*/
public static void testProviderType() throws Exception {
Builder a = new Builder();
a.addClasspath(new File("bin"));
a.setPrivatePackage("test.versionpolicy.implemented");
a.setExportPackage("test.versionpolicy.api");
a.setImportPackage("test.versionpolicy.api"); // what changed so this is
// not automatically
// added?
a.setProperty("build", "123");
Jar jar = a.build();
assertTrue(a.check());
Manifest m = jar.getManifest();
m.write(System.err);
Domain d = Domain.domain(m);
Parameters parameters = d.getImportPackage();
Attrs attrs = parameters.get("test.versionpolicy.api");
assertNotNull(attrs);
assertEquals("[1.2,1.3)", attrs.get("version"));
}
@SuppressWarnings("unchecked")
@Override
public <C> C setSettingValue(Setting<C> setting, Parameters parameters, C value) {
if (parameters == null)
throw new SecurityException("You should provide Cloud and request parameters");
boolean useSession = parameters.get(USE_REQ);
if (useSession) {
C ret = getSettingValue(setting, parameters);
HttpServletRequest req = parameters.get(Parameter.REQUEST);
req.getSession(true).setAttribute(getKey(setting), value);
return ret;
} else {
Cloud cloud = parameters.get(Parameter.CLOUD);
if (cloud.getUser().getRank() == org.mmbase.security.Rank.ADMIN) {
saveSettingValue(setting, value);
return (C) settingValues.put(setting, value);
} else {
throw new SecurityException("Permission denied");
}
}
}
/** Check implementation version policy. Uses the package test.versionpolicy.(uses|implemented) */
static void assertPolicy(String pack, String type) throws Exception {
Builder a = new Builder();
a.addClasspath(new File("bin"));
a.setProperty("Export-Package", "test.versionpolicy.api");
Jar jar = a.build();
Builder b = new Builder();
b.addClasspath(jar);
b.addClasspath(new File("bin"));
b.setProperty("-versionpolicy-impl", "IMPL");
b.setProperty("-versionpolicy-uses", "USES");
b.setProperty("Private-Package", pack);
b.build();
Manifest m = b.getJar().getManifest();
m.write(System.err);
Map<String, String> map = b.getImports().getByFQN("test.versionpolicy.api");
assertNotNull(map);
// String s = map.get(Constants.IMPLEMENTED_DIRECTIVE);
// assertEquals("true", s);
Parameters mp = Processor.parseHeader(m.getMainAttributes().getValue("Import-Package"), null);
assertEquals(type, mp.get("test.versionpolicy.api").get("version"));
}
public void loadModel(String file) throws Exception {
ObjectInputStream in = new ObjectInputStream(new FileInputStream(file));
params.parameters = (double[]) in.readObject();
pipe.dataAlphabet = (Alphabet) in.readObject();
pipe.typeAlphabet = (Alphabet) in.readObject();
// afm 06-04-08
if (options.separateLab) {
classifier = (Classifier) in.readObject();
}
in.close();
pipe.closeAlphabets();
}
@SuppressWarnings("unchecked")
@Override
public <C> C getSettingValue(Setting<C> setting, Parameters parameters) {
boolean useSession = parameters != null && parameters.get(USE_REQ);
if (useSession) {
HttpServletRequest req = parameters.get(Parameter.REQUEST);
if (req != null) {
Object v = req.getSession(true).getAttribute(getKey(setting));
if (v != null) {
return setting.getDataType().cast(v, null, null);
}
}
}
if (settingValues.containsKey(setting)) {
return (C) settingValues.get(setting);
} else {
C settingValue = loadSettingValue(setting);
if (settingValue != null) {
settingValues.put(setting, settingValue);
return settingValue;
}
return setting.getDataType().getDefaultValue();
}
}
/**
* Returns if the classifier of the class subsumes the classifier passed as a parameter.
*
* @param cl is the subsumed classifier.
* @return a boolean indicating if it subsumes
*/
public boolean doesSubsume(Classifier cl) {
int i;
// First, check if the condition is the same
if (action != cl.getAction()) return false;
// Then, check that is more general
if (parameters.couldSubsume()) {
for (i = 0; i < rep.length; i++) {
if (!rep[i].isMoreGeneral(cl.rep[i])) return false;
}
return true;
}
return false;
} // end doesSubsume
@Override
public Node getUserNode(Parameters frameworkParameters) {
Cloud cloud = frameworkParameters.get(Parameter.CLOUD);
if (cloud == null) {
return null;
} else {
try {
int userNode = cloud.getCloudContext().getAuthentication().getNode(cloud.getUser());
if (cloud.hasNode(userNode)) {
return cloud.getNode(userNode);
} else {
return null;
}
} catch (UnsupportedOperationException uoe) {
// never mind
return null;
}
}
}
/**
* Prints the desnormalized classifier to the specified file.
*
* @param fout is the file output where the classifier has to be printed.
*/
public void printNotNorm(PrintWriter fout) {
int i = 0;
fout.print(" ");
try {
for (i = 0; i < rep.length; i++) {
if (Config.typeOfAttributes[i].equals("ternary")) {
rep[i].print(fout);
} else if (Config.typeOfAttributes[i].equals("integer")) {
rep[i].printNotNorm(fout, Config.attBounds[i][0]);
} else if (Config.typeOfAttributes[i].equals("real")) {
rep[i].printNotNorm(fout, Config.attBounds[i][0], Config.attBounds[i][1]);
}
}
} catch (Exception e) {
System.out.println("Exception when printing the attribute: " + i);
e.printStackTrace();
}
fout.print("\t " + (String) Config.classConv.elementAt(action));
if (parameters != null) parameters.print(fout);
}
/**
* Returns if the classifier can subsume. The classifier has to be sufficiently accurate and
* sufficiently experienced to subsume another classifier.
*
* @return a boolean indicating if the classifier can subsume.
*/
public boolean couldSubsume() {
return parameters.couldSubsume();
} // end couldSubsume
public CommandData parseCommandData(ArtifactData artifact) throws Exception {
File source = new File(artifact.file);
if (!source.isFile()) throw new FileNotFoundException();
CommandData data = new CommandData();
data.sha = artifact.sha;
data.jpmRepoDir = repoDir.getCanonicalPath();
JarFile jar = new JarFile(source);
try {
reporter.trace("Parsing %s", source);
Manifest m = jar.getManifest();
Attributes main = m.getMainAttributes();
data.name = data.bsn = main.getValue("Bundle-SymbolicName");
String version = main.getValue("Bundle-Version");
if (version == null) data.version = Version.LOWEST;
else data.version = new Version(version);
data.main = main.getValue("Main-Class");
data.description = main.getValue("Bundle-Description");
data.title = main.getValue("JPM-Name");
reporter.trace("name " + data.name + " " + data.main + " " + data.title);
DependencyCollector path = new DependencyCollector(this);
path.add(artifact);
DependencyCollector bundles = new DependencyCollector(this);
if (main.getValue("JPM-Classpath") != null) {
Parameters requires = OSGiHeader.parseHeader(main.getValue("JPM-Classpath"));
for (Map.Entry<String, Attrs> e : requires.entrySet()) {
path.add(e.getKey(), e.getValue().get("name")); // coordinate
}
} else if (!artifact.local) { // No JPM-Classpath, falling back to
// server's revision
// Iterable<RevisionRef> closure =
// library.getClosure(artifact.sha,
// false);
// System.out.println("getting closure " + artifact.url + " " +
// Strings.join("\n",closure));
// if (closure != null) {
// for (RevisionRef ref : closure) {
// path.add(Hex.toHexString(ref.revision));
// }
// }
}
if (main.getValue("JPM-Runbundles") != null) {
Parameters jpmrunbundles = OSGiHeader.parseHeader(main.getValue("JPM-Runbundles"));
for (Map.Entry<String, Attrs> e : jpmrunbundles.entrySet()) {
bundles.add(e.getKey(), e.getValue().get("name"));
}
}
reporter.trace("collect digests runpath");
data.dependencies.addAll(path.getDigests());
reporter.trace("collect digests bundles");
data.runbundles.addAll(bundles.getDigests());
Parameters command = OSGiHeader.parseHeader(main.getValue("JPM-Command"));
if (command.size() > 1) reporter.error("Only one command can be specified");
for (Map.Entry<String, Attrs> e : command.entrySet()) {
data.name = e.getKey();
Attrs attrs = e.getValue();
if (attrs.containsKey("jvmargs")) data.jvmArgs = attrs.get("jvmargs");
if (attrs.containsKey("title")) data.title = attrs.get("title");
if (data.title != null) data.title = data.name;
}
return data;
} finally {
jar.close();
}
}
private void trainingIter(int[] instanceLengths, String trainfile, File train_forest, int iter)
throws IOException {
int numUpd = 0;
ObjectInputStream in = new ObjectInputStream(new FileInputStream(train_forest));
boolean evaluateI = true;
int numInstances = instanceLengths.length;
for (int i = 0; i < numInstances; i++) {
if ((i + 1) % 500 == 0) {
System.out.print((i + 1) + ",");
// System.out.println(" "+(i+1)+" instances");
}
int length = instanceLengths[i];
// Get production crap.
FeatureVector[][][] fvs = new FeatureVector[length][length][2];
double[][][] probs = new double[length][length][2];
FeatureVector[][][][] nt_fvs = new FeatureVector[length][pipe.types.length][2][2];
double[][][][] nt_probs = new double[length][pipe.types.length][2][2];
FeatureVector[][][] fvs_trips = new FeatureVector[length][length][length];
double[][][] probs_trips = new double[length][length][length];
FeatureVector[][][] fvs_sibs = new FeatureVector[length][length][2];
double[][][] probs_sibs = new double[length][length][2];
DependencyInstance inst;
if (options.secondOrder) {
inst =
((DependencyPipe2O) pipe)
.readInstance(
in,
length,
fvs,
probs,
fvs_trips,
probs_trips,
fvs_sibs,
probs_sibs,
nt_fvs,
nt_probs,
params);
} else inst = pipe.readInstance(in, length, fvs, probs, nt_fvs, nt_probs, params);
double upd =
(double) (options.numIters * numInstances - (numInstances * (iter - 1) + (i + 1)) + 1);
int K = options.trainK;
Object[][] d = null;
if (options.decodeType.equals("proj")) {
if (options.secondOrder)
d =
((DependencyDecoder2O) decoder)
.decodeProjective(
inst,
fvs,
probs,
fvs_trips,
probs_trips,
fvs_sibs,
probs_sibs,
nt_fvs,
nt_probs,
K);
else d = decoder.decodeProjective(inst, fvs, probs, nt_fvs, nt_probs, K);
}
if (options.decodeType.equals("non-proj")) {
if (options.secondOrder)
d =
((DependencyDecoder2O) decoder)
.decodeNonProjective(
inst,
fvs,
probs,
fvs_trips,
probs_trips,
fvs_sibs,
probs_sibs,
nt_fvs,
nt_probs,
K);
else d = decoder.decodeNonProjective(inst, fvs, probs, nt_fvs, nt_probs, K);
}
params.updateParamsMIRA(inst, d, upd);
}
// System.out.println("");
// System.out.println(" "+numInstances+" instances");
System.out.print(numInstances);
in.close();
}
/**
* Sets the time stamp for this classifier.
*
* @param tStamp is the time stamp
*/
public void setTime(int tStamp) {
parameters.setTime(tStamp);
} // end setTime
/** Sets the numerosity of the classifier. */
public void setNumerosity(int num) {
parameters.setNumerosity(num);
} // end setNumerosity
/**
* Computes the generality of the classifier and stores it in it corresponding parameter in the
* class Parameters.
*/
public void calculateGenerality() {
parameters.setGenerality(getGenerality());
} // end calculateGenerality
/**
* Increases the numerosity of the classifier.
*
* @param num is the number to increase the numerosity of the classifier.
*/
public void increaseNumerosity(int num) {
parameters.increaseNumerosity(num);
} // end increaseNumerosity