@Override
public void write(GAMObject go) {
try {
XMLEventFactory efac = XMLEventFactory.newInstance();
XMLEvent startDoc = efac.createStartDocument("UTF-8", "1.0");
XMLEvent endDoc = efac.createEndDocument();
XMLEvent startGAML = efac.createStartElement("", "", "gaml");
XMLEvent attrVersion = efac.createAttribute("version", "1.0");
XMLEvent endGAML = efac.createEndElement("", "", "gaml");
XMLEvent startServer = efac.createStartElement("", "", "server");
String server = go.getServer();
if (server == null) {
server = "";
}
XMLEvent charServer = efac.createCharacters(server);
XMLEvent endServer = efac.createEndElement("", "", "server");
XMLEvent startModel = efac.createStartElement("", "", "model");
XMLEvent attrName = efac.createAttribute("name", go.getName());
XMLEvent endModel = efac.createEndElement("", "", "model");
/*<?xml version="1.0" encoding="UTF-8"?>*/
writer.add(startDoc);
writer.add(newLine);
/*<gaml>*/
writer.add(startGAML);
writer.add(attrVersion);
writer.add(newLine);
/*<server>*/
writer.add(tab);
writer.add(startServer);
writer.add(charServer);
writer.add(endServer);
writer.add(newLine);
/*<model>*/
writer.add(tab);
writer.add(startModel);
writer.add(attrName);
writer.add(newLine);
/*<meta>*/
writeMetaModel(writer, go);
/*<tags>*/
Vector<String> tags = go.getTags();
if (tags.size() > 0) {
String sIndent2 = " " + " ";
XMLEvent indent2 = efac.createDTD(sIndent2);
writeTags(writer, indent2, tags);
}
/*<annotations>*/
Properties annotations = go.getAnnotations();
if (annotations.size() > 0) {
String sIndent2 = " " + " ";
XMLEvent indent2 = efac.createDTD(sIndent2);
writeAnnotations(writer, indent2, annotations);
}
/*<sections>*/
if (go.getSections().size() > 0) {
writeSections(writer, go);
}
/*<structures>*/
if (go.getStructures().size() > 0) {
writeStructures(writer, go);
}
/*</model>*/
writer.add(tab);
writer.add(endModel);
writer.add(newLine);
/*<user-annotations>*/
Properties userAnnotations = go.getUserAnnotations();
if (userAnnotations.size() > 0) {
String sIndent1 = " ";
XMLEvent indent1 = efac.createDTD(sIndent1);
writeUserAnnotations(writer, indent1, userAnnotations);
}
/*</gaml>*/
writer.add(endGAML);
writer.add(newLine);
writer.add(endDoc);
writer.flush();
} catch (XMLStreamException e) {
System.out.println("GAMLWriterV10::write - error writing GAM");
e.printStackTrace();
}
}
private void writeSections(XMLEventWriter writer, GAMObject go) {
XMLEventFactory efac = XMLEventFactory.newInstance();
/* create indent from 2 tabs */
String sIndent = " " + " ";
XMLEvent indent = efac.createDTD(sIndent);
String section_format = go.getSectionFormat();
if (section_format == null) {
section_format = "JPEG";
}
String section_type = go.getSectionType();
if (section_type == null) {
section_type = "sequence_image";
}
XMLEvent startSections = efac.createStartElement("", "", "sections");
XMLEvent endSections = efac.createEndElement("", "", "sections");
XMLEvent attrFirstnum = efac.createAttribute("firstnum", String.valueOf(go.getFirstNum()));
XMLEvent attrLastnum = efac.createAttribute("lastnum", String.valueOf(go.getLastNum()));
XMLEvent attrSectionType = efac.createAttribute("type", section_type);
XMLEvent attrSectionFormat = efac.createAttribute("format", section_format);
XMLEvent startSection = efac.createStartElement("", "", "section");
XMLEvent endSection = efac.createEndElement("", "", "section");
XMLEvent startStack = efac.createStartElement("", "", "stack");
XMLEvent endStack = efac.createEndElement("", "", "stack");
XMLEvent attrNumber;
XMLEvent attrSrc;
Set<Entry<Integer, TDRSection>> sections = go.getSections().entrySet();
Iterator<Entry<Integer, TDRSection>> it = sections.iterator();
try {
/* sequence images or stack image? */
if (section_type == null || section_type.equalsIgnoreCase("sequence_image")) {
/*<sections>: in case of SEQUENCE images */
writer.add(indent);
writer.add(startSections);
writer.add(attrFirstnum);
writer.add(attrLastnum);
writer.add(attrSectionType);
writer.add(attrSectionFormat);
writer.add(newLine);
while (it.hasNext()) {
Entry<Integer, TDRSection> section = (Entry<Integer, TDRSection>) it.next();
String number = String.valueOf(section.getKey());
/* local version: ObjectLoadingStr = ""
* server version: ObjectLoadingStr = "ObjectLoadingServlet"
* + "biolobj_name=" + tdro.getName()
* + "?image=";
* */
String src = ObjectLoadingStr + section.getValue().getImageFileName();
attrNumber = efac.createAttribute("number", number);
attrSrc = efac.createAttribute("src", src);
/*<section>*/
writer.add(indent);
writer.add(tab);
writer.add(startSection);
writer.add(attrNumber);
writer.add(attrSrc);
writer.add(endSection);
writer.add(newLine);
}
/*<sections>*/
writer.add(indent);
writer.add(endSections);
writer.add(newLine);
} else {
/*<sections>: in case of STACK images */
writer.add(indent);
writer.add(startSections);
writer.add(attrFirstnum);
writer.add(attrLastnum);
writer.add(attrSectionType);
writer.add(attrSectionFormat);
writer.add(newLine);
/* local version: ObjectLoadingStr = ""
* server version: ObjectLoadingStr = "ObjectLoadingServlet"
* + "biolobj_name=" + tdro.getName()
* + "?image=";
* */
String src = ObjectLoadingStr + go.getStackFileName();
attrSrc = efac.createAttribute("src", src);
/*<stack>*/
writer.add(indent);
writer.add(tab);
writer.add(startStack);
writer.add(attrSrc);
writer.add(endStack);
writer.add(newLine);
/*<sections>*/
writer.add(indent);
writer.add(endSections);
writer.add(newLine);
}
} catch (XMLStreamException e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
}
