private void writeMetaStructure(XMLEventWriter writer, GAMObject go) {
XMLEventFactory efac = XMLEventFactory.newInstance();
/* create indent from 2 tabs */
String sIndent = " " + " ";
XMLEvent indent = efac.createDTD(sIndent);
XMLEvent startMetadata = efac.createStartElement("", "", "metadata");
XMLEvent endMetadata = efac.createEndElement("", "", "metadata");
String data = go.getType();
if (data == null) {
data = "";
}
XMLEvent startType = efac.createStartElement("", "", "type");
XMLEvent charsType = efac.createCharacters(data);
XMLEvent endType = efac.createEndElement("", "", "type");
data = go.getAuthor();
if (data == null) {
data = "";
}
XMLEvent startAuthor = efac.createStartElement("", "", "author");
XMLEvent charsAuthor = efac.createCharacters(data);
XMLEvent endAuthor = efac.createEndElement("", "", "author");
data = go.getOrganization();
if (data == null) {
data = "";
}
XMLEvent startOrganization = efac.createStartElement("", "", "organization");
XMLEvent charsOrganization = efac.createCharacters(data);
XMLEvent endOrganization = efac.createEndElement("", "", "organization");
data = go.getOrganism();
if (data == null) {
data = "";
}
XMLEvent startOrganism = efac.createStartElement("", "", "organism");
XMLEvent charsOrganism = efac.createCharacters(data);
XMLEvent endOrganism = efac.createEndElement("", "", "organism");
data = go.getStage();
if (data == null) {
data = "";
}
XMLEvent startDevelStage = efac.createStartElement("", "", "developmental_stage");
XMLEvent charsDevelStage = efac.createCharacters(data);
XMLEvent endDevelStage = efac.createEndElement("", "", "developmental_stage");
data = go.getDescription();
if (data == null) {
data = "";
}
XMLEvent startDescription = efac.createStartElement("", "", "description");
XMLEvent charsDescription = efac.createCharacters(data);
XMLEvent endDescription = efac.createEndElement("", "", "description");
Collection<XMLEvent> attrSampling = new ArrayList<XMLEvent>();
attrSampling.add(efac.createAttribute("pointdistX", String.valueOf(go.getPointDistX())));
attrSampling.add(efac.createAttribute("pointdistY", String.valueOf(go.getPointDistY())));
attrSampling.add(efac.createAttribute("stepsize", String.valueOf(go.getStepsize())));
attrSampling.add(efac.createAttribute("numberofpointsX", String.valueOf(go.getNumPointsX())));
attrSampling.add(efac.createAttribute("numberofpointsY", String.valueOf(go.getNumPointsY())));
String voxelSize = go.getVoxelSize();
if (voxelSize == null) {
voxelSize = "";
}
attrSampling.add(efac.createAttribute("voxelsize", voxelSize));
XMLEvent startSampling =
efac.createStartElement("", "", "sampling", attrSampling.iterator(), null);
XMLEvent endSampling = efac.createEndElement("", "", "sampling");
try {
/*<metadata>*/
writer.add(indent);
writer.add(startMetadata);
writer.add(newLine);
/*<type>*/
writer.add(indent);
writer.add(tab);
writer.add(startType);
writer.add(charsType);
writer.add(endType);
writer.add(newLine);
/*<author>*/
writer.add(indent);
writer.add(tab);
writer.add(startAuthor);
writer.add(charsAuthor);
writer.add(endAuthor);
writer.add(newLine);
/*<organization>*/
writer.add(indent);
writer.add(tab);
writer.add(startOrganization);
writer.add(charsOrganization);
writer.add(endOrganization);
writer.add(newLine);
/*<organism>*/
writer.add(indent);
writer.add(tab);
writer.add(startOrganism);
writer.add(charsOrganism);
writer.add(endOrganism);
writer.add(newLine);
/*<developmental_stage>*/
writer.add(indent);
writer.add(tab);
writer.add(startDevelStage);
writer.add(charsDevelStage);
writer.add(endDevelStage);
writer.add(newLine);
/*<description>*/
writer.add(indent);
writer.add(tab);
writer.add(startDescription);
writer.add(charsDescription);
writer.add(endDescription);
writer.add(newLine);
/*<sampling>*/
writer.add(indent);
writer.add(tab);
writer.add(startSampling);
writer.add(endSampling);
writer.add(newLine);
/*</metadata>*/
writer.add(indent);
writer.add(endMetadata);
writer.add(newLine);
} catch (XMLStreamException e) {
System.out.println("GAMLWriterV10::writerMetadata - error writing Metadata");
e.printStackTrace();
}
}
