Exemple #1
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 public float getFlowValue(int flow) {
   return sff.getFlowgram()[flow];
 }
Exemple #2
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 public int[] getFlowIndex() {
   return Arrays.copyOfRange(sff.getFlow_index(), 4, sff.getFlow_index().length - 4);
 }
Exemple #3
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 public String getKey() {
   return sff.getKey();
 }
Exemple #4
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 public int[] getFlowgram() {
   return sff.getFlowgram();
 }
Exemple #5
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 public int getRow() {
   return sff.getRow();
 }
Exemple #6
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 public String getFlowOrder() {
   return sff.getFlowOrder();
 }
Exemple #7
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 public int getCol() {
   return sff.getCol();
 }
Exemple #8
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 public Read(SffRead sff) {
   super(sff.getBases().substring(4), sff.getName());
   this.sff = sff;
 }
Exemple #9
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 public int[] getAbsoluteFlowIndex() {
   return sff.getAbsoluteFlowIndex();
 }
Exemple #10
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 public String getHtmlFlowGramInfo() {
   return sff.getHtmlFlowInformation(200);
 }
Exemple #11
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 public int findFlow(int basepos) {
   if (basepos < 0) return -1;
   return SeqFlowUtil.findFlow(basepos + 4, sff.getBases(), sff.getFlowOrder());
 }