public float getFlowValue(int flow) {
return sff.getFlowgram()[flow];
}
public int[] getFlowIndex() {
return Arrays.copyOfRange(sff.getFlow_index(), 4, sff.getFlow_index().length - 4);
}
public String getKey() {
return sff.getKey();
}
public int[] getFlowgram() {
return sff.getFlowgram();
}
public int getRow() {
return sff.getRow();
}
public String getFlowOrder() {
return sff.getFlowOrder();
}
public int getCol() {
return sff.getCol();
}
public Read(SffRead sff) {
super(sff.getBases().substring(4), sff.getName());
this.sff = sff;
}
public int[] getAbsoluteFlowIndex() {
return sff.getAbsoluteFlowIndex();
}
public String getHtmlFlowGramInfo() {
return sff.getHtmlFlowInformation(200);
}
public int findFlow(int basepos) {
if (basepos < 0) return -1;
return SeqFlowUtil.findFlow(basepos + 4, sff.getBases(), sff.getFlowOrder());
}