Example #1
0
 public float getFlowValue(int flow) {
   return sff.getFlowgram()[flow];
 }
Example #2
0
 public int[] getFlowIndex() {
   return Arrays.copyOfRange(sff.getFlow_index(), 4, sff.getFlow_index().length - 4);
 }
Example #3
0
 public String getKey() {
   return sff.getKey();
 }
Example #4
0
 public int[] getFlowgram() {
   return sff.getFlowgram();
 }
Example #5
0
 public int getRow() {
   return sff.getRow();
 }
Example #6
0
 public String getFlowOrder() {
   return sff.getFlowOrder();
 }
Example #7
0
 public int getCol() {
   return sff.getCol();
 }
Example #8
0
 public Read(SffRead sff) {
   super(sff.getBases().substring(4), sff.getName());
   this.sff = sff;
 }
Example #9
0
 public int[] getAbsoluteFlowIndex() {
   return sff.getAbsoluteFlowIndex();
 }
Example #10
0
 public String getHtmlFlowGramInfo() {
   return sff.getHtmlFlowInformation(200);
 }
Example #11
0
 public int findFlow(int basepos) {
   if (basepos < 0) return -1;
   return SeqFlowUtil.findFlow(basepos + 4, sff.getBases(), sff.getFlowOrder());
 }