private void testBase(String[] ARGS) throws IOException, GeneralSecurityException {
// Run the pipeline.
VariantSimilarity.main(ARGS);
// Download the pipeline results.
List<GraphResult> results = Lists.newArrayList();
for (GcsPath path : helper.gcsUtil.expand(GcsPath.fromUri(outputPrefix + "*"))) {
BufferedReader reader = helper.openOutput(path.toString());
for (String line = reader.readLine(); line != null; line = reader.readLine()) {
results.add(GraphResult.fromString(line));
}
}
// Check the pipeline results.
assertEquals(helper.PLATINUM_GENOMES_NUMBER_OF_SAMPLES, results.size());
assertThat(results, CoreMatchers.allOf(CoreMatchers.hasItems(EXPECTED_RESULT)));
}
