public static Map<Concept, TreeSet<SNP>> run(
Map<Concept, LinkedList<Gene>> conceptToGenes, Map<Gene, LinkedList<SNP>> geneToSNPs) {
Map<Concept, TreeSet<SNP>> map = new HashMap<Concept, TreeSet<SNP>>();
for (Concept concept : conceptToGenes.keySet()) {
TreeSet<SNP> snpSet = new TreeSet<SNP>();
for (Gene gene : conceptToGenes.get(concept)) {
if (geneToSNPs.containsKey(gene)) {
concept.addGene(gene);
for (SNP snp : geneToSNPs.get(gene)) {
snpSet.add(snp);
concept.addSNP(snp);
}
}
}
map.put(concept, snpSet);
}
return map;
}
