public String getInputUsername(StudyBean studyBean, StudySubjectBean studySubjectBean) {
String inputUserName = null;
if (studySubjectBean != null) {
if (studyBean.getParentStudyId() > 0) studyBean = getStudy(studyBean.getParentStudyId());
inputUserName = studyBean.getOid() + "." + studySubjectBean.getOid();
}
return inputUserName;
}
public void collectOdmStudy() {
StudyBean study = studyBase.getStudy();
String studyOID = study.getOid();
if (studyOID == null || studyOID.length() <= 0) {
logger.info(
"Constructed studyOID using study_id because oc_oid is missing from the table - study.");
studyOID = "" + study.getId();
}
odmStudy.setOid(studyOID);
collectGlobalVariables();
collectBasicDefinitions();
collectMetaDataVersion();
}
public SimpleTrigger generateImportTrigger(
FormProcessor fp,
UserAccountBean userAccount,
StudyBean study,
Date startDateTime,
String locale) {
String jobName = fp.getString(JOB_NAME);
String email = fp.getString(EMAIL);
String jobDesc = fp.getString(JOB_DESC);
String directory = fp.getString(DIRECTORY);
// what kinds of periods do we have? hourly, daily, weekly?
long interval = 0;
int hours = fp.getInt("hours");
int minutes = fp.getInt("minutes");
if (hours > 0) {
long hoursInt = hours * 3600000;
interval = interval + hoursInt;
}
if (minutes > 0) {
long minutesInt = minutes * 60000;
interval = interval + minutesInt;
}
SimpleTrigger trigger = new SimpleTrigger(jobName, IMPORT_TRIGGER, 64000, interval);
trigger.setDescription(jobDesc);
// set just the start date
trigger.setStartTime(startDateTime);
trigger.setName(jobName); // + datasetId);
trigger.setGroup(IMPORT_TRIGGER); // + datasetId);
trigger.setMisfireInstruction(
SimpleTrigger.MISFIRE_INSTRUCTION_RESCHEDULE_NEXT_WITH_EXISTING_COUNT);
// set job data map
JobDataMap jobDataMap = new JobDataMap();
jobDataMap.put(EMAIL, email);
jobDataMap.put(USER_ID, userAccount.getId());
jobDataMap.put(STUDY_NAME, study.getName());
jobDataMap.put(STUDY_OID, study.getOid());
jobDataMap.put(DIRECTORY, directory);
jobDataMap.put(ExampleSpringJob.LOCALE, locale);
jobDataMap.put("hours", hours);
jobDataMap.put("minutes", minutes);
trigger.setJobDataMap(jobDataMap);
trigger.setVolatility(false);
return trigger;
}
private void collectMetaDataVersion() {
ArrayList<StudyEventDefinitionBean> sedBeansInStudy =
(ArrayList<StudyEventDefinitionBean>) studyBase.getSedBeansInStudy();
if (sedBeansInStudy == null || sedBeansInStudy.size() < 1) {
logger.info("null, because there is no study event definition in this study.");
return;
}
StudyBean study = studyBase.getStudy();
MetaDataVersionBean metadata = this.odmStudy.getMetaDataVersion();
StudyParameterValueDAO spvdao = new StudyParameterValueDAO(this.ds);
int parentId = study.getParentStudyId() > 0 ? study.getParentStudyId() : study.getId();
StudyParameterValueBean spv = spvdao.findByHandleAndStudy(parentId, "discrepancyManagement");
metadata.setSoftHard(spv.getValue().equalsIgnoreCase("true") ? "Hard" : "Soft");
OdmExtractDAO oedao = new OdmExtractDAO(this.ds);
int studyId = study.getId();
int parentStudyId = study.getParentStudyId() > 0 ? study.getParentStudyId() : studyId;
if (this.getCategory() == 1 && study.isSite(study.getParentStudyId())) {
// populate MetaDataVersion attributes
if (dataset != null) {
metadata.setOid(dataset.getODMMetaDataVersionOid() + "-" + study.getOid());
metadata.setName(dataset.getODMMetaDataVersionName() + "-" + study.getOid());
this.setParentMetaDataVersionOid(dataset.getODMMetaDataVersionOid());
}
if (metadata.getOid() == null || metadata.getOid().length() <= 0) {
metadata.setOid("v1.0.0" + "-" + study.getOid());
this.setParentMetaDataVersionOid("v1.0.0");
}
if (metadata.getName() == null || metadata.getName().length() <= 0) {
metadata.setName("MetaDataVersion_v1.0.0" + "-" + study.getOid());
}
// populate Include
this.collectIncludeFromParentInSameFile();
// populate protocol
oedao.getUpdatedSiteMetadata(parentStudyId, studyId, metadata, this.odmBean.getODMVersion());
} else {
if (dataset != null) {
metadata.setOid(dataset.getODMMetaDataVersionOid());
metadata.setName(dataset.getODMMetaDataVersionName());
}
if (metadata.getOid() == null || metadata.getOid().length() <= 0) {
metadata.setOid("v1.0.0");
}
if (metadata.getName() == null || metadata.getName().length() <= 0) {
metadata.setName("MetaDataVersion_v1.0.0");
}
// populate Include
String psOid = new String();
String pmOid = new String();
if (dataset != null) {
psOid = dataset.getODMPriorStudyOid();
pmOid = dataset.getODMPriorMetaDataVersionOid();
}
if (pmOid != null && pmOid.length() > 0) {
MetaDataVersionIncludeBean ib = metadata.getInclude();
ib.setMetaDataVersionOID(pmOid);
if (psOid != null && psOid.length() > 0) {
ib.setStudyOID(psOid);
} else {
ib.setStudyOID(study.getOid());
}
}
// populate protocol
// Set<Integer> nullCodeSet = oedao.getMetadata(parentStudyId,
// studyId,
// metadata, this.getODMBean().getODMVersion());
// studyBase.setNullClSet(nullCodeSet);
oedao.getMetadata(parentStudyId, studyId, metadata, this.odmBean.getODMVersion());
}
}
public SimpleTrigger generateTrigger(
FormProcessor fp, UserAccountBean userAccount, StudyBean study, String locale) {
Date startDateTime = fp.getDateTime(DATE_START_JOB);
// check the above?
int datasetId = fp.getInt(DATASET_ID);
String period = fp.getString(PERIOD);
String email = fp.getString(EMAIL);
String jobName = fp.getString(JOB_NAME);
String jobDesc = fp.getString(JOB_DESC);
String spss = fp.getString(SPSS);
String tab = fp.getString(TAB);
String cdisc = fp.getString(CDISC);
String cdisc12 = fp.getString(ExampleSpringJob.CDISC12);
String cdisc13 = fp.getString(ExampleSpringJob.CDISC13);
String cdisc13oc = fp.getString(ExampleSpringJob.CDISC13OC);
BigInteger interval = new BigInteger("0");
if ("monthly".equalsIgnoreCase(period)) {
interval = new BigInteger("2419200000"); // how many
// milliseconds in
// a month? should
// be 24192000000
} else if ("weekly".equalsIgnoreCase(period)) {
interval = new BigInteger("604800000"); // how many
// milliseconds in
// a week? should
// be 6048000000
} else { // daily
interval = new BigInteger("86400000"); // how many
// milliseconds in a
// day?
}
// set up and commit job here
SimpleTrigger trigger = new SimpleTrigger(jobName, "DEFAULT", 64000, interval.longValue());
// set the job detail name,
// based on our choice of format above
// what if there is more than one detail?
// what is the number of times it should repeat?
// arbitrary large number, 64K should be enough :)
trigger.setDescription(jobDesc);
// set just the start date
trigger.setStartTime(startDateTime);
trigger.setName(jobName); // + datasetId);
trigger.setGroup("DEFAULT"); // + datasetId);
trigger.setMisfireInstruction(
SimpleTrigger.MISFIRE_INSTRUCTION_RESCHEDULE_NEXT_WITH_EXISTING_COUNT);
// set job data map
JobDataMap jobDataMap = new JobDataMap();
jobDataMap.put(DATASET_ID, datasetId);
jobDataMap.put(PERIOD, period);
jobDataMap.put(EMAIL, email);
jobDataMap.put(TAB, tab);
jobDataMap.put(CDISC, cdisc);
jobDataMap.put(ExampleSpringJob.CDISC12, cdisc12);
jobDataMap.put(ExampleSpringJob.LOCALE, locale);
// System.out.println("found 1.2: " +
// jobDataMap.get(ExampleSpringJob.CDISC12));
jobDataMap.put(ExampleSpringJob.CDISC13, cdisc13);
// System.out.println("found 1.3: " +
// jobDataMap.get(ExampleSpringJob.CDISC13));
jobDataMap.put(ExampleSpringJob.CDISC13OC, cdisc13oc);
// System.out.println("found 1.3oc: " +
// jobDataMap.get(ExampleSpringJob.CDISC13OC));
jobDataMap.put(SPSS, spss);
jobDataMap.put(USER_ID, userAccount.getId());
// StudyDAO studyDAO = new StudyDAO();
jobDataMap.put(STUDY_ID, study.getId());
jobDataMap.put(STUDY_NAME, study.getName());
jobDataMap.put(STUDY_OID, study.getOid());
trigger.setJobDataMap(jobDataMap);
// trigger.setRepeatInterval(interval.longValue());
// System.out.println("default for volatile: " + trigger.isVolatile());
trigger.setVolatility(false);
return trigger;
}