private void collectGlobalVariables() {
StudyBean study = studyBase.getStudy();
String sn = study.getName();
String sd = study.getSummary().trim();
String pn = study.getIdentifier();
if (parentStudy.getId() > 0) {
sn = parentStudy.getName() + " - " + study.getName();
sd = parentStudy.getSummary().trim() + " - " + study.getSummary().trim();
pn = parentStudy.getIdentifier() + " - " + study.getIdentifier();
}
GlobalVariablesBean gv = this.odmStudy.getGlobalVariables();
gv.setStudyName(sn);
gv.setStudyDescription(sd);
gv.setProtocolName(pn);
}
@SuppressWarnings("unchecked")
@Override
public void setDataAndLimitVariables(TableFacade tableFacade) {
// initialize i18n
resword = ResourceBundleProvider.getWordsBundle(getLocale());
resformat = ResourceBundleProvider.getFormatBundle(getLocale());
Limit limit = tableFacade.getLimit();
ListSubjectFilter listSubjectFilter = getListSubjectFilter(limit);
if (!limit.isComplete()) {
int totalRows = getSubjectDao().getCountWithFilter(listSubjectFilter, getCurrentStudy());
tableFacade.setTotalRows(totalRows);
}
ListSubjectSort listSubjectSort = getListSubjectSort(limit);
int rowStart = limit.getRowSelect().getRowStart();
int rowEnd = limit.getRowSelect().getRowEnd();
Collection<SubjectBean> items =
getSubjectDao()
.getWithFilterAndSort(
getCurrentStudy(), listSubjectFilter, listSubjectSort, rowStart, rowEnd);
Collection<HashMap<Object, Object>> theItems = new ArrayList<HashMap<Object, Object>>();
for (SubjectBean subject : items) {
UserAccountBean owner = (UserAccountBean) getUserAccountDao().findByPK(subject.getOwnerId());
UserAccountBean updater =
subject.getUpdaterId() == 0
? null
: (UserAccountBean) getUserAccountDao().findByPK(subject.getUpdaterId());
HashMap<Object, Object> h = new HashMap<Object, Object>();
String studySubjectIdAndStudy = "";
List<StudySubjectBean> studySubjects =
getStudySubjectDao().findAllBySubjectId(subject.getId());
for (StudySubjectBean studySubjectBean : studySubjects) {
StudyBean study = (StudyBean) getStudyDao().findByPK(studySubjectBean.getStudyId());
studySubjectIdAndStudy += studySubjectIdAndStudy.length() == 0 ? "" : ",";
studySubjectIdAndStudy += study.getIdentifier() + "-" + studySubjectBean.getLabel();
}
h.put("studySubjectIdAndStudy", studySubjectIdAndStudy);
h.put("subject", subject);
h.put("subject.uniqueIdentifier", subject.getUniqueIdentifier());
h.put("subject.gender", subject.getGender());
h.put("subject.createdDate", subject.getCreatedDate());
h.put("subject.owner", owner);
h.put("subject.updatedDate", subject.getUpdatedDate());
h.put("subject.updater", updater);
h.put("subject.status", subject.getStatus());
theItems.add(h);
}
tableFacade.setItems(theItems);
}
/** Inserts the new study into database */
private void submitStudy() {
FormProcessor fp = new FormProcessor(request);
StudyDAO sdao = new StudyDAO(sm.getDataSource());
StudyBean study = (StudyBean) session.getAttribute("newStudy");
ArrayList parameters = study.getStudyParameters();
logger.info("study bean to be created:\n");
logger.info(
study.getName()
+ "\n"
+ study.getIdentifier()
+ "\n"
+ study.getParentStudyId()
+ "\n"
+ study.getSummary()
+ "\n"
+ study.getPrincipalInvestigator()
+ "\n"
+ study.getDatePlannedStart()
+ "\n"
+ study.getDatePlannedEnd()
+ "\n"
+ study.getFacilityName()
+ "\n"
+ study.getFacilityCity()
+ "\n"
+ study.getFacilityState()
+ "\n"
+ study.getFacilityZip()
+ "\n"
+ study.getFacilityCountry()
+ "\n"
+ study.getFacilityRecruitmentStatus()
+ "\n"
+ study.getFacilityContactName()
+ "\n"
+ study.getFacilityContactEmail()
+ "\n"
+ study.getFacilityContactPhone()
+ "\n"
+ study.getFacilityContactDegree());
study.setOwner(ub);
study.setCreatedDate(new Date());
StudyBean parent = (StudyBean) sdao.findByPK(study.getParentStudyId());
study.setType(parent.getType());
// YW 10-10-2007, enable setting site status
study.setStatus(study.getStatus());
// YW >>
study.setGenetic(parent.isGenetic());
study = (StudyBean) sdao.create(study);
StudyParameterValueDAO spvdao = new StudyParameterValueDAO(sm.getDataSource());
for (int i = 0; i < parameters.size(); i++) {
StudyParamsConfig config = (StudyParamsConfig) parameters.get(i);
StudyParameterValueBean spv = config.getValue();
spv.setStudyId(study.getId());
spv = (StudyParameterValueBean) spvdao.create(config.getValue());
}
// YW << here only "collectDob" and "genderRequired" have been corrected
// for sites.
StudyParameterValueBean spv = new StudyParameterValueBean();
StudyParameterValueBean parentSPV = spvdao.findByHandleAndStudy(parent.getId(), "collectDob");
spv.setStudyId(study.getId());
spv.setParameter("collectDob");
spv.setValue(parentSPV.getValue());
spvdao.create(spv);
parentSPV = spvdao.findByHandleAndStudy(parent.getId(), "genderRequired");
spv.setParameter("genderRequired");
spv.setValue(parentSPV.getValue());
spvdao.create(spv);
// YW >>
// switch user to the newly created site
session.setAttribute("study", session.getAttribute("newStudy"));
currentStudy = (StudyBean) session.getAttribute("study");
session.removeAttribute("newStudy");
addPageMessage(respage.getString("the_new_site_created_succesfully_current"));
forwardPage(Page.SITE_LIST_SERVLET);
}
/**
* Validates the first section of study and save it into study bean
*
* @throws Exception
*/
private void confirmStudy() throws Exception {
Validator v = new Validator(request);
FormProcessor fp = new FormProcessor(request);
v.addValidation("name", Validator.NO_BLANKS);
v.addValidation("uniqueProId", Validator.NO_BLANKS);
// >> tbh
// v.addValidation("description", Validator.NO_BLANKS);
// << tbh, #3943, 07/2009
v.addValidation("prinInvestigator", Validator.NO_BLANKS);
if (!StringUtil.isBlank(fp.getString(INPUT_START_DATE))) {
v.addValidation(INPUT_START_DATE, Validator.IS_A_DATE);
}
if (!StringUtil.isBlank(fp.getString(INPUT_END_DATE))) {
v.addValidation(INPUT_END_DATE, Validator.IS_A_DATE);
}
if (!StringUtil.isBlank(fp.getString("facConEmail"))) {
v.addValidation("facConEmail", Validator.IS_A_EMAIL);
}
if (!StringUtil.isBlank(fp.getString(INPUT_VER_DATE))) {
v.addValidation(INPUT_VER_DATE, Validator.IS_A_DATE);
}
// v.addValidation("statusId", Validator.IS_VALID_TERM);
v.addValidation(
"secondProId",
Validator.LENGTH_NUMERIC_COMPARISON,
NumericComparisonOperator.LESS_THAN_OR_EQUAL_TO,
255);
v.addValidation(
"facName",
Validator.LENGTH_NUMERIC_COMPARISON,
NumericComparisonOperator.LESS_THAN_OR_EQUAL_TO,
255);
v.addValidation(
"facCity",
Validator.LENGTH_NUMERIC_COMPARISON,
NumericComparisonOperator.LESS_THAN_OR_EQUAL_TO,
255);
v.addValidation(
"facState",
Validator.LENGTH_NUMERIC_COMPARISON,
NumericComparisonOperator.LESS_THAN_OR_EQUAL_TO,
20);
v.addValidation(
"facZip",
Validator.LENGTH_NUMERIC_COMPARISON,
NumericComparisonOperator.LESS_THAN_OR_EQUAL_TO,
64);
v.addValidation(
"facCountry",
Validator.LENGTH_NUMERIC_COMPARISON,
NumericComparisonOperator.LESS_THAN_OR_EQUAL_TO,
64);
v.addValidation(
"facConName",
Validator.LENGTH_NUMERIC_COMPARISON,
NumericComparisonOperator.LESS_THAN_OR_EQUAL_TO,
255);
v.addValidation(
"facConDegree",
Validator.LENGTH_NUMERIC_COMPARISON,
NumericComparisonOperator.LESS_THAN_OR_EQUAL_TO,
255);
v.addValidation(
"facConPhone",
Validator.LENGTH_NUMERIC_COMPARISON,
NumericComparisonOperator.LESS_THAN_OR_EQUAL_TO,
255);
v.addValidation(
"facConEmail",
Validator.LENGTH_NUMERIC_COMPARISON,
NumericComparisonOperator.LESS_THAN_OR_EQUAL_TO,
255);
errors = v.validate();
// >> tbh
StudyDAO studyDAO = new StudyDAO(sm.getDataSource());
ArrayList<StudyBean> allStudies = (ArrayList<StudyBean>) studyDAO.findAll();
for (StudyBean thisBean : allStudies) {
if (fp.getString("uniqueProId").trim().equals(thisBean.getIdentifier())) {
Validator.addError(
errors, "uniqueProId", resexception.getString("unique_protocol_id_existed"));
}
}
// << tbh #3999 08/2009
if (fp.getString("name").trim().length() > 100) {
Validator.addError(errors, "name", resexception.getString("maximum_lenght_name_100"));
}
if (fp.getString("uniqueProId").trim().length() > 30) {
Validator.addError(
errors, "uniqueProId", resexception.getString("maximum_lenght_unique_protocol_30"));
}
if (fp.getString("description").trim().length() > 255) {
Validator.addError(
errors, "description", resexception.getString("maximum_lenght_brief_summary_255"));
}
if (fp.getString("prinInvestigator").trim().length() > 255) {
Validator.addError(
errors,
"prinInvestigator",
resexception.getString("maximum_lenght_principal_investigator_255"));
}
if (fp.getInt("expectedTotalEnrollment") <= 0) {
Validator.addError(
errors,
"expectedTotalEnrollment",
respage.getString("expected_total_enrollment_must_be_a_positive_number"));
}
StudyBean newSite = this.createStudyBean();
StudyBean parentStudy =
(StudyBean) new StudyDAO(sm.getDataSource()).findByPK(newSite.getParentStudyId());
session.setAttribute("newStudy", newSite);
session.setAttribute("definitions", this.createSiteEventDefinitions(parentStudy));
if (errors.isEmpty()) {
logger.info("no errors");
forwardPage(Page.CONFIRM_CREATE_SUB_STUDY);
} else {
try {
local_df.parse(fp.getString(INPUT_START_DATE));
fp.addPresetValue(INPUT_START_DATE, local_df.format(fp.getDate(INPUT_START_DATE)));
} catch (ParseException pe) {
fp.addPresetValue(INPUT_START_DATE, fp.getString(INPUT_START_DATE));
}
try {
local_df.parse(fp.getString(INPUT_END_DATE));
fp.addPresetValue(INPUT_END_DATE, local_df.format(fp.getDate(INPUT_END_DATE)));
} catch (ParseException pe) {
fp.addPresetValue(INPUT_END_DATE, fp.getString(INPUT_END_DATE));
}
try {
local_df.parse(fp.getString(INPUT_VER_DATE));
fp.addPresetValue(INPUT_VER_DATE, local_df.format(fp.getDate(INPUT_VER_DATE)));
} catch (ParseException pe) {
fp.addPresetValue(INPUT_VER_DATE, fp.getString(INPUT_VER_DATE));
}
setPresetValues(fp.getPresetValues());
logger.info("has validation errors");
request.setAttribute("formMessages", errors);
// request.setAttribute("facRecruitStatusMap",
// CreateStudyServlet.facRecruitStatusMap);
request.setAttribute("statuses", Status.toActiveArrayList());
forwardPage(Page.CREATE_SUB_STUDY);
}
}
