Example #1
0
  // Raises the Save As dialog to have the user identify the location to save groups of things.
  public File determineSaveLocation(String dialogTitle, String defaultFolderName) {
    String defaultPath = this.getFileChooser().getCurrentDirectory().getPath();
    if (!WWUtil.isEmpty(defaultPath)) defaultPath += File.separatorChar + defaultFolderName;

    File outFile;

    while (true) {
      this.getFileChooser().setDialogTitle(dialogTitle);
      this.getFileChooser().setSelectedFile(new File(defaultPath));
      this.getFileChooser().setMultiSelectionEnabled(false);
      this.getFileChooser().setFileSelectionMode(JFileChooser.DIRECTORIES_ONLY);

      int status = this.getFileChooser().showSaveDialog(this.getFrame());
      if (status != JFileChooser.APPROVE_OPTION) return null;

      outFile = this.getFileChooser().getSelectedFile();
      if (outFile == null) {
        this.showMessageDialog("No location selected", "No Selection", JOptionPane.ERROR_MESSAGE);
        continue;
      }

      break;
    }

    if (!outFile.exists())
      //noinspection ResultOfMethodCallIgnored
      outFile.mkdir();

    return outFile;
  }
Example #2
0
 public void totalExport() {
   File expf = new File("export");
   if (expf.exists()) rmrf(expf);
   expf.mkdirs();
   for (int sto = 0; sto < storeLocs.size(); sto++) {
     try {
       String sl =
           storeLocs.get(sto).getAbsolutePath().replaceAll("/", "-").replaceAll("\\\\", "-");
       File estore = new File(expf, sl);
       estore.mkdir();
       File log = new File(estore, LIBRARY_NAME);
       PrintWriter pw = new PrintWriter(log);
       for (int i = 0; i < store.getRowCount(); i++)
         if (store.curStore(i) == sto) {
           File enc = store.locate(i);
           File dec = sec.prepareMainFile(enc, estore, false);
           pw.println(dec.getName());
           pw.println(store.getValueAt(i, Storage.COL_DATE));
           pw.println(store.getValueAt(i, Storage.COL_TAGS));
           synchronized (jobs) {
             jobs.addLast(expJob(enc, dec));
           }
         }
       pw.close();
     } catch (IOException exc) {
       exc.printStackTrace();
       JOptionPane.showMessageDialog(frm, "Exporting Failed");
       return;
     }
   }
   JOptionPane.showMessageDialog(frm, "Exporting to:\n   " + expf.getAbsolutePath());
 }
Example #3
0
 PageSmoother(String pdf) throws IOException {
   File file = new File(pdf);
   ndone = 0;
   RandomAccessFile raf = new RandomAccessFile(file, "r");
   FileChannel channel = raf.getChannel();
   ByteBuffer buf = channel.map(FileChannel.MapMode.READ_ONLY, 0, channel.size());
   pdffile = new PDFFile(buf);
   page1 = new CountDownLatch(1);
   raf.close();
   tmpdir = File.createTempFile("pagesmoother", "");
   tmpdir.delete();
   tmpdir.mkdir();
 }
  private void setupLock() {
    if (dataDir == null) {
      lockDir = null;
    } else {
      File dir = new File(dataDir, LOCK_FILE);
      if (!dir.mkdir()) {

        dir.delete();
        if (!dir.mkdir()) {
          dir = null;
          if (getBoolean("application.showLocalStorageDialogs", true)) {
            Resources.showMessageDialog(
                null,
                JOptionPane.ERROR_MESSAGE,
                messageBundle,
                "fontManager.properties.title",
                "manager.properties.session.nolock",
                LOCK_FILE);
          }
        }
      }
      lockDir = dir;
    }
  }
Example #5
0
  /**
   * Create/Replace a Directory
   *
   * @param Direct the Directory in which the new Directory is made
   */
  public void createDirectory(String Direct) {
    File dir = new File(Direct + File_Direct + "\\");

    if (dir.isDirectory()) { // Check if this directory already exists
      if (JOptionPane.showConfirmDialog(
              null, "This directory already exists, do you wish to replace it?", "Replace", 0)
          != 0) {
        return;
      }
      // Delete directory
      DeleteDirect(Direct + File_Direct + "\\");
    }
    // Replace/Create directory
    dir.mkdir();
    Msgs.Type("Directory created", Display);
  }
  public SeatInfo() {
    File file = new File(".", "data");
    file.mkdir();
    File f = new File(file, "SeatInfo.txt");

    try {
      raf = new RandomAccessFile(f, "rw");

      if (raf.length() == 0) {
        raf.setLength(31 * 4 * FLIGHT_PER_DAY);
        for (int i = 0; i < 31 * FLIGHT_PER_DAY; i++) raf.writeInt(0);
      }
    } catch (Exception e) {
      e.printStackTrace();
    }
  }
  /** Get the default folder */
  public File getDefaultFolder() {
    final File recentFolder = _folderTracker.getMostRecentFile();

    if (recentFolder != null && recentFolder.exists()) {
      if (_subfolderName != null) {
        final File defaultFolder = new File(recentFolder, _subfolderName);
        if (!defaultFolder.exists()) {
          defaultFolder.mkdir();
        }
        return defaultFolder;
      } else {
        return recentFolder;
      }
    }

    return null;
  }
Example #8
0
  public String getJLMPropertiesDir() {
    String jlmPropertiesDir = null;

    String value = Game.getProperty("jlm.configuration.file.path");
    if (value != null) {
      String paths[] = value.split(",");

      for (String localPath : paths) {
        localPath = localPath.replace("$HOME$", System.getProperty("user.home"));
        File localPropertiesFileParentDirectory = new File(localPath);
        File localPropertiesFileDirectory =
            new File(localPath, Game.getLocalPropertiesSubdirectory());

        if (!localPropertiesFileParentDirectory.exists()) {
          continue;
        } else if (localPropertiesFileDirectory.exists() || localPropertiesFileDirectory.mkdir()) {
          jlmPropertiesDir = localPropertiesFileParentDirectory.getPath();
          break;
        } else {
          Logger.log(
              "Game:storeProperties",
              "cannot create local properties store directory ("
                  + localPropertiesFileDirectory
                  + ")");
        }
      }
    } else {
      JOptionPane.showConfirmDialog(
          null,
          "No path provided in the property file (or property file not found)\n"
              + "You may want to export your session with the menu 'Session/Export session'\n"
              + "to save your work manually.\n\n"
              + "Quit without saving?",
          "Cannot save your changes. Quit without saving?",
          JOptionPane.YES_NO_OPTION,
          JOptionPane.ERROR_MESSAGE);
      return null;
    }
    return jlmPropertiesDir;
  }
Example #9
0
  public static void copyFolder(File src, File dest, JLabel updatelbl, JLabel updatelbl2)
      throws IOException {

    if (src.isDirectory()) {

      if (!dest.exists()) {
        dest.mkdir();
        updatelbl.setText("Directory copied from " + src + "  to " + dest);
      }

      String files[] = src.list();

      for (String file : files) {

        File srcFile = new File(src, file);
        File destFile = new File(dest, file);
        // recursive copy
        copyFolder(srcFile, destFile, updatelbl, updatelbl2);
      }

    } else {

      InputStream in = new FileInputStream(src);
      OutputStream out = new FileOutputStream(dest);

      byte[] buffer = new byte[1024];

      int length;

      while ((length = in.read(buffer)) > 0) {
        out.write(buffer, 0, length);
      }

      in.close();
      out.close();
      updatelbl.setText("File copied from " + src);
      updatelbl2.setText(" to " + dest);
    }
  }
Example #10
0
  /*
   * Carries out a number of tests, generates NEURON, GENESIS and NeuroML code etc.
   */
  private static void doTests(neuronEditorFrame nef, String fileName) {
    System.out.println(
        "Testing Cvapp/NeuroMorpho.Org by generating NEURON, GENESIS and NeuroML files for "
            + fileName);
    File tempDir = new File("temp");
    if (!tempDir.exists()) tempDir.mkdir();

    neuronEditorPanel nep = nef.getNeuronEditorPanel();

    String rootFileName = fileName;
    if (rootFileName.toLowerCase().endsWith(".swc")) {
      rootFileName = rootFileName.substring(0, rootFileName.length() - 4);
    }

    if (rootFileName.lastIndexOf(System.getProperty("file.separator")) > 0) {
      rootFileName =
          rootFileName.substring(
              rootFileName.lastIndexOf(System.getProperty("file.separator")) + 1);
    }

    // NEURON save...

    String neuronFileName = rootFileName + ".hoc";
    File neuronFile = new File(tempDir, neuronFileName);
    File neuronTestFile = new File(tempDir, rootFileName + "_test.hoc");

    nep.writeStringToFile(nep.getCell().HOCwriteNS(), neuronFile.getAbsolutePath());

    StringBuilder sbNeuTest = new StringBuilder();
    sbNeuTest.append("load_file(\"nrngui.hoc\")\n");
    sbNeuTest.append("load_file(\"../neuronUtils/nCtools.hoc\")\n");
    sbNeuTest.append("load_file(\"../neuronUtils/cellCheck.hoc\")\n");
    sbNeuTest.append("load_file(\"nrngui.hoc\")\n");
    sbNeuTest.append("load_file(\"" + neuronFileName + "\")\n\n");
    sbNeuTest.append("forall morph()\n");
    System.out.println("--------------------------------------------------------------");
    nep.writeStringToFile(sbNeuTest.toString(), neuronTestFile.getAbsolutePath());

    System.out.println(
        "Saved NEURON representation of the file to: "
            + neuronFile.getAbsolutePath()
            + ": "
            + neuronFile.exists());
    System.out.println("--------------------------------------------------------------");

    // GENESIS save...

    String genesisFileName = rootFileName + ".p";
    File genesisFile = new File(tempDir, genesisFileName);
    File genesisTestFile = new File(tempDir, rootFileName + "_test.g");

    nep.writeStringToFile(nep.getCell().GENESISwriteHR(), genesisFile.getAbsolutePath());

    StringBuilder sbGenTest = new StringBuilder();

    sbGenTest.append("include compartments \n");
    sbGenTest.append("create neutral /library\n");
    sbGenTest.append("disable /library\n");
    sbGenTest.append("ce /library\n");
    sbGenTest.append("make_cylind_compartment\n");
    sbGenTest.append("make_cylind_symcompartment\n");
    sbGenTest.append("make_sphere_compartment\n");
    sbGenTest.append("ce /\n");
    sbGenTest.append(
        "echo \"Prototype compartments created, reading cell from " + genesisFileName + "\"\n");
    sbGenTest.append("readcell " + genesisFileName + " /mycell\n\n");

    sbGenTest.append("create xform /form [0,0,400,400] -nolabel\n");
    sbGenTest.append(
        "create xdraw /form/draw [0,0,100%,100%] -wx 0.002 -wy 0.002 -transform ortho3d -bg white\n");
    sbGenTest.append(
        "setfield /form/draw xmin -3.0E-4 xmax 3.0E-4 ymin -3.0E-4 ymax 3.0E-4 vx 0.0 vy 0.0 vz -0.002\n");
    sbGenTest.append(
        "create xcell /form/draw/cell -path \"/mycell/##[][TYPE=compartment],/mycell/##[][TYPE=symcompartment]\" -colfield Vm -colmin -0.07 -colmax 0.03 -diarange -5\n");
    sbGenTest.append("xcolorscale hot\n");
    sbGenTest.append("xshow /form\n\n");
    sbGenTest.append("showfield /mycell/##[][TYPE=compartment] **\n\n");

    nep.writeStringToFile(sbGenTest.toString(), genesisTestFile.getAbsolutePath());

    System.out.println(
        "Saved GENESIS representation of the file to: "
            + genesisFile.getAbsolutePath()
            + ": "
            + genesisFile.exists());
    System.out.println("--------------------------------------------------------------");

    // NeuroML save...

    String nml1FileName = rootFileName + ".xml";
    File nml1File = new File(tempDir, nml1FileName);

    nep.writeStringToFile(nep.getCell().writeNeuroML_v1_8_1(), nml1File.getAbsolutePath());

    System.out.println(
        "Saved NeuroML representation of the file to: "
            + nml1File.getAbsolutePath()
            + ": "
            + nml1File.exists());

    File v1schemaFile = new File("Schemas/v1.8.1/Level3/NeuroML_Level3_v1.8.1.xsd");

    validateXML(nml1File, v1schemaFile);

    String nml2FileName = rootFileName + ".cell.nml";

    if (Character.isDigit(nml2FileName.charAt(0))) {
      nml2FileName = "Cell_" + nml2FileName;
    }
    File nml2File = new File(tempDir, nml2FileName);

    nep.writeStringToFile(nep.getCell().writeNeuroML_v2beta(), nml2File.getAbsolutePath());

    System.out.println(
        "Saved NeuroML representation of the file to: "
            + nml2File.getAbsolutePath()
            + ": "
            + nml2File.exists());

    validateXMLWithURL(nml2File, "Schemas/v2/NeuroML_v2beta4.xsd");
  }
Example #11
0
  @Override
  public void run() {
    this.cardIndex = 0;

    File base = new File(Constants.IO.imageBaseDir);
    if (!base.exists()) {
      base.mkdir();
    }

    Connection.ProxyType configProxyType =
        Connection.ProxyType.valueByText(
            PreferencesDialog.getCachedValue(PreferencesDialog.KEY_PROXY_TYPE, "None"));

    Proxy.Type type = Proxy.Type.DIRECT;
    switch (configProxyType) {
      case HTTP:
        type = Proxy.Type.HTTP;
        break;
      case SOCKS:
        type = Proxy.Type.SOCKS;
        break;
      case NONE:
      default:
        p = Proxy.NO_PROXY;
        break;
    }

    if (type != Proxy.Type.DIRECT) {
      try {
        String address = PreferencesDialog.getCachedValue(PreferencesDialog.KEY_PROXY_ADDRESS, "");
        Integer port =
            Integer.parseInt(
                PreferencesDialog.getCachedValue(PreferencesDialog.KEY_PROXY_PORT, "80"));
        p = new Proxy(type, new InetSocketAddress(address, port));
      } catch (Exception ex) {
        throw new RuntimeException("Gui_DownloadPictures : error 1 - " + ex);
      }
    }

    if (p != null) {
      HashSet<String> ignoreUrls = SettingsManager.getIntance().getIgnoreUrls();

      ArrayList<CardDownloadData> cardsToDownload = this.checkBox.isSelected() ? type2cards : cards;

      update(0, cardsToDownload.size());

      for (int i = 0; i < cardsToDownload.size() && !cancel; i++) {
        try {

          CardDownloadData card = cardsToDownload.get(i);

          log.info("Downloading card: " + card.getName() + " (" + card.getSet() + ")");

          String url;
          if (ignoreUrls.contains(card.getSet()) || card.isToken()) {
            if (card.getCollectorId() != 0) {
              continue;
            }
            url = cardImageSource.generateTokenUrl(card);
          } else {
            url = cardImageSource.generateURL(card);
          }

          if (url != null) {
            Logger.getLogger(this.getClass()).info(url);
            Runnable task = new DownloadTask(card, new URL(url), cardsToDownload.size());
            executor.execute(task);
          } else {
            synchronized (sync) {
              update(cardIndex + 1, cardsToDownload.size());
            }
          }

        } catch (Exception ex) {
          log.error(ex, ex);
        }
      }
      executor.shutdown();
      while (!executor.isTerminated()) {
        try {
          Thread.sleep(1000);
        } catch (InterruptedException ie) {
        }
      }
    }
    try {
      TVFS.umount();
    } catch (FsSyncException e) {
      e.printStackTrace();
      JOptionPane.showMessageDialog(
          null, "Couldn't unmount zip files", "Error", JOptionPane.ERROR_MESSAGE);
    } finally {
      System.gc();
    }
    closeButton.setText("Close");
  }
Example #12
0
  boolean fileWriter(File file, JList InstanceList) throws IOException { //returns true if successful.
    useAppletJS = JmolViewer.checkOption(viewer, "webMakerCreateJS");
    //          JOptionPane.showMessageDialog(null, "Creating directory for data...");
    String datadirPath = file.getPath();
    String datadirName = file.getName();
    String fileName = null;
    if (datadirName.indexOf(".htm") > 0) {
      fileName = datadirName;
      datadirPath = file.getParent();
      file = new File(datadirPath);
      datadirName = file.getName();
    } else {
      fileName = datadirName + ".html";
    }
    datadirPath = datadirPath.replace('\\', '/');
    boolean made_datadir = (file.exists() && file.isDirectory() || file.mkdir());
    DefaultListModel listModel = (DefaultListModel) InstanceList.getModel();
    LogPanel.log("");
    if (made_datadir) {
      LogPanel.log(GT._("Using directory {0}", datadirPath));
      LogPanel.log("  " + GT._("adding JmolPopIn.js"));
 
      viewer.writeTextFile(datadirPath + "/JmolPopIn.js",
          WebExport.getResourceString(this, "JmolPopIn.js"));
      for (int i = 0; i < listModel.getSize(); i++) {
        JmolInstance thisInstance = (JmolInstance) (listModel.getElementAt(i));
        String javaname = thisInstance.javaname;
        String script = thisInstance.script;
        LogPanel.log("  ...jmolApplet" + i);
        LogPanel.log("      ..." + GT._("adding {0}.png", javaname));
        try {
          thisInstance.movepict(datadirPath);
        } catch (IOException IOe) {
          throw IOe;
        }

        String fileList = "";
        fileList += addFileList(script, "/*file*/");
        fileList += addFileList(script, "FILE0=");
        fileList += addFileList(script, "FILE1=");
        if (localAppletPath.getText().equals(".")
            || remoteAppletPath.getText().equals("."))
          fileList += "Jmol.js\nJmolApplet.jar";
        String[] filesToCopy = fileList.split("\n");
        String[] copiedFileNames = new String[filesToCopy.length];
        String f;
        int pt;
        for (int iFile = 0; iFile < filesToCopy.length; iFile++) {
          if ((pt = (f = filesToCopy[iFile]).indexOf("|")) >= 0)
            filesToCopy[iFile] = f.substring(0, pt);
          copiedFileNames[iFile] = copyBinaryFile(filesToCopy[iFile],
              datadirPath);
        }
        script = localizeFileReferences(script, filesToCopy, copiedFileNames);
        LogPanel.log("      ..." + GT._("adding {0}.spt", javaname));
        viewer.writeTextFile(datadirPath + "/" + javaname + ".spt", script);
      }
      String html = WebExport.getResourceString(this, panelName + "_template");
      html = fixHtml(html);
      appletInfoDivs = "";
      StringBuffer appletDefs = new StringBuffer();
      if (!useAppletJS)
        htmlAppletTemplate = WebExport.getResourceString(this, panelName + "_template2");
      for (int i = 0; i < listModel.getSize(); i++)
        html = getAppletDefs(i, html, appletDefs, (JmolInstance) listModel
            .getElementAt(i));
      html = TextFormat.simpleReplace(html, "@AUTHOR@", GT.escapeHTML(pageAuthorName
          .getText()));
      html = TextFormat.simpleReplace(html, "@TITLE@", GT.escapeHTML(webPageTitle.getText()));
      html = TextFormat.simpleReplace(html, "@REMOTEAPPLETPATH@",
          remoteAppletPath.getText());
      html = TextFormat.simpleReplace(html, "@LOCALAPPLETPATH@",
          localAppletPath.getText());
      html = TextFormat.simpleReplace(html, "@DATADIRNAME@", datadirName);
      if (appletInfoDivs.length() > 0)
        appletInfoDivs = "\n<div style='display:none'>\n" + appletInfoDivs
            + "\n</div>\n";
      String str = appletDefs.toString();
      if (useAppletJS)
        str = "<script type='text/javascript'>\n" + str + "\n</script>";
      html = TextFormat.simpleReplace(html, "@APPLETINFO@", appletInfoDivs);
      html = TextFormat.simpleReplace(html, "@APPLETDEFS@", str);
      html = TextFormat.simpleReplace(html, "@CREATIONDATA@", GT.escapeHTML(WebExport
          .TimeStamp_WebLink()));
      html = TextFormat.simpleReplace(html, "@AUTHORDATA@",
          GT.escapeHTML(GT._("Based on template by A. Herr&#x00E1;ez as modified by J. Gutow")));
      html = TextFormat.simpleReplace(html, "@LOGDATA@", "<pre>\n"
          + LogPanel.getText() + "\n</pre>\n");
      LogPanel.log("      ..." + GT._("creating {0}", fileName));
      viewer.writeTextFile(datadirPath + "/" + fileName, html);
    } else {
      IOException IOe = new IOException("Error creating directory: "
          + datadirPath);
      throw IOe;
    }
    LogPanel.log("");
    return true;
  }