private void ListSubDirectorySizes(File file) {
File[] files;
files =
file.listFiles(
new FileFilter() {
@Override
public boolean accept(File file) {
// if (!file.isDirectory()){
// return false; //To change body of implemented methods use
// File | Settings | File Templates.
// }else{
// return true;
// }
return true;
}
});
Map<String, Long> dirListing = new HashMap<String, Long>();
for (File dir : files) {
DiskUsage diskUsage = new DiskUsage();
diskUsage.accept(dir);
// long size = diskUsage.getSize() / (1024 * 1024);
long size = diskUsage.getSize();
dirListing.put(dir.getName(), size);
}
ValueComparator bvc = new ValueComparator(dirListing);
TreeMap<String, Long> sorted_map = new TreeMap<String, Long>(bvc);
sorted_map.putAll(dirListing);
PrettyPrint(file, sorted_map);
}
public GalaxyViewer(Settings settings, boolean animatorFrame) throws Exception {
super("Stars GalaxyViewer");
this.settings = settings;
this.animatorFrame = animatorFrame;
if (settings.gameName.equals("")) throw new Exception("GameName not defined in settings.");
setDefaultCloseOperation(EXIT_ON_CLOSE);
File dir = new File(settings.directory);
File map = new File(dir, settings.getGameName() + ".MAP");
if (map.exists() == false) {
File f = new File(dir.getParentFile(), settings.getGameName() + ".MAP");
if (f.exists()) map = f;
else {
String error = "Could not find " + map.getAbsolutePath() + "\n";
error += "Export this file from Stars! (Only needs to be done one time pr game)";
throw new Exception(error);
}
}
Vector<File> mFiles = new Vector<File>();
Vector<File> hFiles = new Vector<File>();
for (File f : dir.listFiles()) {
if (f.getName().toUpperCase().endsWith("MAP")) continue;
if (f.getName().toUpperCase().endsWith("HST")) continue;
if (f.getName().toUpperCase().startsWith(settings.getGameName() + ".M")) mFiles.addElement(f);
else if (f.getName().toUpperCase().startsWith(settings.getGameName() + ".H"))
hFiles.addElement(f);
}
if (mFiles.size() == 0) throw new Exception("No M-files found matching game name.");
if (hFiles.size() == 0) throw new Exception("No H-files found matching game name.");
parseMapFile(map);
Vector<File> files = new Vector<File>();
files.addAll(mFiles);
files.addAll(hFiles);
p = new Parser(files);
calculateColors();
// UI:
JPanel cp = (JPanel) getContentPane();
cp.setLayout(new BorderLayout());
cp.add(universe, BorderLayout.CENTER);
JPanel south = createPanel(0, hw, new JLabel("Search: "), search, names, zoom, colorize);
search.setPreferredSize(new Dimension(100, -1));
cp.add(south, BorderLayout.SOUTH);
hw.addActionListener(this);
names.addActionListener(this);
zoom.addChangeListener(this);
search.addKeyListener(this);
colorize.addActionListener(this);
setSize(800, 600);
Dimension screen = Toolkit.getDefaultToolkit().getScreenSize();
setLocation((screen.width - getWidth()) / 2, (screen.height - getHeight()) / 2);
setVisible(animatorFrame == false);
if (animatorFrame) names.setSelected(false);
}
public static double getFolderSize(File directory) {
double length = 0;
for (File f : directory.listFiles()) {
if (!f.isDirectory()) length += f.length();
else length += getFolderSize(f);
}
double size = (length / 1024.0) / 1024.0;
return size;
}
private ArrayList GetFolderTree(String s_Dir, String s_Flag, int n_Indent, int n_TreeIndex) {
String s_List = "";
ArrayList aSubFolders = new ArrayList();
File file = new File(s_Dir);
File[] filelist = file.listFiles();
if (filelist != null && filelist.length > 0) {
for (int i = 0; i < filelist.length; i++) {
if (filelist[i].isDirectory()) {
aSubFolders.add(filelist[i].getName());
}
}
int n_Count = aSubFolders.size();
String s_LastFlag = "";
String s_Folder = "";
for (int i = 1; i <= n_Count; i++) {
if (i < n_Count) {
s_LastFlag = "0";
} else {
s_LastFlag = "1";
}
s_Folder = aSubFolders.get(i - 1).toString();
s_List =
s_List
+ "arr"
+ s_Flag
+ "["
+ String.valueOf(n_TreeIndex)
+ "]=new Array(\""
+ s_Folder
+ "\","
+ String.valueOf(n_Indent)
+ ", "
+ s_LastFlag
+ ");\n";
n_TreeIndex = n_TreeIndex + 1;
ArrayList a_Temp =
GetFolderTree(s_Dir + s_Folder + sFileSeparator, s_Flag, n_Indent + 1, n_TreeIndex);
s_List = s_List + a_Temp.get(0).toString();
n_TreeIndex = Integer.valueOf(a_Temp.get(1).toString()).intValue();
}
}
ArrayList a_Return = new ArrayList();
a_Return.add(s_List);
a_Return.add(String.valueOf(n_TreeIndex));
return a_Return;
}
protected void loadPlugins() {
File pluginDirectory = new File(System.getProperty("soapui.home"), "plugins");
File[] pluginFiles = pluginDirectory.listFiles();
if (pluginFiles != null) {
for (File pluginFile : pluginFiles) {
log.info("Adding plugin from [" + pluginFile.getAbsolutePath() + "]");
try {
loadOldStylePluginFrom(pluginFile);
} catch (Throwable e) {
log.warn("Could not load plugin from file [" + pluginFile + "]");
}
}
}
}
public static boolean deleteAll(File file) {
boolean b = true;
if ((file != null) && file.exists()) {
if (file.isDirectory()) {
try {
File[] files = file.listFiles();
for (File f : files) b &= deleteAll(f);
} catch (Exception e) {
return false;
}
}
b &= file.delete();
}
return b;
}
void addChildren(DefaultMutableTreeNode parent, File parentDirFile) {
for (File file : parentDirFile.listFiles()) {
String[] namesplitStrings = file.toString().split("\\\\");
String filename = namesplitStrings[namesplitStrings.length - 1];
if (file.isDirectory()) {
DefaultMutableTreeNode child = new DefaultMutableTreeNode(filename);
addChildren(child, file);
parent.add(child);
} else if (file.isFile()) {
parent.add(new DefaultMutableTreeNode(filename));
}
}
}
private void populateList() {
try {
String path = ".";
fileList.setText(" ");
String files;
File folder = new File(path);
File[] listOfFiles = folder.listFiles();
for (int i = 0; i < listOfFiles.length; i++) {
if (listOfFiles[i].isFile()) {
files = listOfFiles[i].getName();
// if(files.endsWith(".dat"))
fileList.append(files + "\n");
}
}
} catch (java.security.AccessControlException k) {
}
}
@Nullable
private static File findOldConfigDir(
@NotNull File configDir, @Nullable String customPathSelector) {
final File selectorDir = CONFIG_RELATED_PATH.isEmpty() ? configDir : configDir.getParentFile();
final File parent = selectorDir.getParentFile();
if (parent == null || !parent.exists()) {
return null;
}
File maxFile = null;
long lastModified = 0;
final String selector =
PathManager.getPathsSelector() != null
? PathManager.getPathsSelector()
: selectorDir.getName();
final String prefix = getPrefixFromSelector(selector);
final String customPrefix =
customPathSelector != null ? getPrefixFromSelector(customPathSelector) : null;
for (File file :
parent.listFiles(
new FilenameFilter() {
@Override
public boolean accept(@NotNull File file, @NotNull String name) {
return StringUtil.startsWithIgnoreCase(name, prefix)
|| customPrefix != null && StringUtil.startsWithIgnoreCase(name, customPrefix);
}
})) {
File options = new File(file, CONFIG_RELATED_PATH + OPTIONS_XML);
if (!options.exists()) {
continue;
}
long modified = options.lastModified();
if (modified > lastModified) {
lastModified = modified;
maxFile = file;
}
}
return maxFile != null ? new File(maxFile, CONFIG_RELATED_PATH) : null;
}
boolean tryDir(String d) {
ClassLoader L = getClass().getClassLoader();
File p = new File(d, PACKAGE);
System.out.println("Try " + p);
if (!p.exists() || !p.isDirectory()) return false;
for (File f : p.listFiles()) {
String s = f.getName();
if (!s.endsWith(".class")) continue;
String name = s.substring(0, s.length() - 6);
try {
Class<?> c = L.loadClass(PACKAGE + "." + name);
if (!Animator.class.isAssignableFrom(c)) continue;
Animator a = (Animator) c.newInstance();
a.container().setPreferredSize(DIM);
map.put(name, a);
System.out.println(" " + name);
// ClassNotFoundException InstantiationException IllegalAccessException
} catch (Exception e) {
continue;
}
}
return map.size() > 0;
}
public static boolean rmrf(File fi) {
if (fi.isDirectory()) {
boolean done = true;
for (File subfi : fi.listFiles()) {
if (!rmrf(subfi)) {
done = false;
}
}
if (!done) return false;
return fi.delete();
} else {
boolean done = true;
for (int i = 0; i < 10; i++) {
done = fi.delete();
if (done) break;
try {
Thread.sleep(100);
} catch (InterruptedException e) {
// do nothing
}
}
return done;
}
}
public boolean accept(File file) {
if (file.isFile()) size += file.length();
else file.listFiles(this);
return false;
}
private void InitUpload() throws ServletException, IOException {
String sConfig = myUtil.ReadFile(myUtil.getConfigFileRealPath(m_request.getServletPath()));
ArrayList aStyle = myUtil.getConfigArray("Style", sConfig);
String sAllowExt, sUploadDir, sBaseUrl, sContentPath;
String sCurrDir, sDir;
int nAllowBrowse;
String sPathShareImage, sPathShareFlash, sPathShareMedia, sPathShareOther;
// param
String sType = myUtil.dealNull(m_request.getParameter("type")).toUpperCase();
String sStyleName = myUtil.dealNull(m_request.getParameter("style"));
String sCusDir = myUtil.dealNull(m_request.getParameter("cusdir"));
String sAction = myUtil.dealNull(m_request.getParameter("action")).toUpperCase();
String s_SKey = myUtil.dealNull(m_request.getParameter("skey"));
// InitUpload
String[] aStyleConfig = new String[1];
boolean bValidStyle = false;
for (int i = 0; i < aStyle.size(); i++) {
aStyleConfig = myUtil.split(aStyle.get(i).toString(), "|||");
if (sStyleName.toLowerCase().equals(aStyleConfig[0].toLowerCase())) {
bValidStyle = true;
break;
}
}
if (!bValidStyle) {
out.print(getOutScript("alert('Invalid Style!')"));
out.close();
return;
}
if (!aStyleConfig[61].equals("1")) {
sCusDir = "";
}
String ss_FileSize = "",
ss_FileBrowse = "",
ss_SpaceSize = "",
ss_SpacePath = "",
ss_PathMode = "",
ss_PathUpload = "",
ss_PathCusDir = "",
ss_PathCode = "",
ss_PathView = "";
if ((aStyleConfig[61].equals("2")) && (!s_SKey.equals(""))) {
ss_FileSize =
(String) myUtil.dealNull(m_session.getAttribute("eWebEditor_" + s_SKey + "_FileSize"));
ss_FileBrowse =
(String) myUtil.dealNull(m_session.getAttribute("eWebEditor_" + s_SKey + "_FileBrowse"));
ss_SpaceSize =
(String) myUtil.dealNull(m_session.getAttribute("eWebEditor_" + s_SKey + "_SpaceSize"));
ss_SpacePath =
(String) myUtil.dealNull(m_session.getAttribute("eWebEditor_" + s_SKey + "_SpacePath"));
ss_PathMode =
(String) myUtil.dealNull(m_session.getAttribute("eWebEditor_" + s_SKey + "_PathMode"));
ss_PathUpload =
(String) myUtil.dealNull(m_session.getAttribute("eWebEditor_" + s_SKey + "_PathUpload"));
ss_PathCusDir =
(String) myUtil.dealNull(m_session.getAttribute("eWebEditor_" + s_SKey + "_PathCusDir"));
ss_PathCode =
(String) myUtil.dealNull(m_session.getAttribute("eWebEditor_" + s_SKey + "_PathCode"));
ss_PathView =
(String) myUtil.dealNull(m_session.getAttribute("eWebEditor_" + s_SKey + "_PathView"));
if (myUtil.IsInt(ss_FileSize)) {
aStyleConfig[11] = ss_FileSize;
aStyleConfig[12] = ss_FileSize;
aStyleConfig[13] = ss_FileSize;
aStyleConfig[14] = ss_FileSize;
aStyleConfig[15] = ss_FileSize;
aStyleConfig[45] = ss_FileSize;
} else {
ss_FileSize = "";
}
if (ss_FileBrowse.equals("0") || ss_FileBrowse.equals("1")) {
aStyleConfig[43] = ss_FileBrowse;
} else {
ss_FileBrowse = "";
}
if (myUtil.IsInt(ss_SpaceSize)) {
aStyleConfig[78] = ss_SpaceSize;
} else {
ss_SpaceSize = "";
}
if (!ss_PathMode.equals("")) {
aStyleConfig[19] = ss_PathMode;
}
if (!ss_PathUpload.equals("")) {
aStyleConfig[3] = ss_PathUpload;
}
if (!ss_PathCode.equals("")) {
aStyleConfig[23] = ss_PathCode;
}
if (!ss_PathView.equals("")) {
aStyleConfig[22] = ss_PathView;
}
sCusDir = ss_PathCusDir;
}
sBaseUrl = aStyleConfig[19];
nAllowBrowse = Integer.valueOf(aStyleConfig[43]).intValue();
if (nAllowBrowse != 1) {
out.print(getOutScript("alert('Do not allow browse!')"));
out.close();
return;
}
if (!sCusDir.equals("")) {
sCusDir = myUtil.replace(sCusDir, "\\", "/");
if ((sCusDir.startsWith("/"))
|| (sCusDir.startsWith("."))
|| (sCusDir.endsWith("."))
|| (sCusDir.indexOf("./") >= 0)
|| (sCusDir.indexOf("/.") >= 0)
|| (sCusDir.indexOf("//") >= 0)
|| (sCusDir.indexOf("..") >= 0)) {
sCusDir = "";
} else {
if (!sCusDir.endsWith("/")) {
sCusDir = sCusDir + "/";
}
}
}
sUploadDir = aStyleConfig[3];
if (!sBaseUrl.equals("3")) {
sUploadDir = myUtil.getRealPathFromRelative(m_request.getServletPath(), sUploadDir);
}
sUploadDir = GetSlashPath(sUploadDir);
sUploadDir =
sUploadDir
+ myUtil.replace(myUtil.replace(sCusDir, "/", sFileSeparator), "\\", sFileSeparator);
if (sType.equals("FILE")) {
sAllowExt = aStyleConfig[6];
} else if (sType.equals("MEDIA")) {
sAllowExt = aStyleConfig[9];
} else if (sType.equals("FLASH")) {
sAllowExt = aStyleConfig[7];
} else {
sAllowExt = aStyleConfig[8];
}
sPathShareImage =
GetSlashPath(
myUtil.getRealPathFromRelative(m_request.getServletPath(), "sharefile/image/"));
sPathShareFlash =
GetSlashPath(
myUtil.getRealPathFromRelative(m_request.getServletPath(), "sharefile/flash/"));
sPathShareMedia =
GetSlashPath(
myUtil.getRealPathFromRelative(m_request.getServletPath(), "sharefile/media/"));
sPathShareOther =
GetSlashPath(
myUtil.getRealPathFromRelative(m_request.getServletPath(), "sharefile/other/"));
String s_Out = "";
if (sAction.equals("FILE")) {
String s_ReturnFlag = myUtil.dealNull(m_request.getParameter("returnflag"));
String s_FolderType = myUtil.dealNull(m_request.getParameter("foldertype"));
String s_Dir = myUtil.dealNull(m_request.getParameter("dir"));
s_Dir = java.net.URLDecoder.decode(s_Dir, "UTF-" + "8");
String s_CurrDir = "";
if (s_FolderType.equals("upload")) {
s_CurrDir = sUploadDir;
} else if (s_FolderType.equals("shareimage")) {
sAllowExt = "";
s_CurrDir = sPathShareImage;
} else if (s_FolderType.equals("shareflash")) {
sAllowExt = "";
s_CurrDir = sPathShareFlash;
} else if (s_FolderType.equals("sharemedia")) {
sAllowExt = "";
s_CurrDir = sPathShareMedia;
} else {
s_FolderType = "shareother";
sAllowExt = "";
s_CurrDir = sPathShareOther;
}
s_Dir = myUtil.replace(s_Dir, "\\", "/");
if ((s_Dir.startsWith("/"))
|| (s_Dir.startsWith("."))
|| (s_Dir.endsWith("."))
|| (s_Dir.indexOf("./") >= 0)
|| (s_Dir.indexOf("/.") >= 0)
|| (s_Dir.indexOf("//") >= 0)
|| (s_Dir.indexOf("..") >= 0)) {
s_Dir = "";
}
String s_Dir2 = myUtil.replace(s_Dir, "/", sFileSeparator);
s_Dir2 = myUtil.replace(s_Dir2, "\\", sFileSeparator);
if (!s_Dir.equals("")) {
if (CheckValidDir(s_CurrDir + s_Dir2)) {
s_CurrDir += s_Dir2;
} else {
s_Dir = "";
}
}
if (CheckValidDir(s_CurrDir)) {
File file = new File(s_CurrDir);
File[] filelist = file.listFiles();
if (filelist != null && filelist.length > 0) {
int n = -1;
for (int i = 0; i < filelist.length; i++) {
if (filelist[i].isFile()) {
String s_FileName = filelist[i].getName();
String s_FileExt = s_FileName.substring(s_FileName.lastIndexOf(".") + 1);
s_FileExt = s_FileExt.toLowerCase();
if (CheckValidExt(sAllowExt, s_FileExt)) {
n++;
s_Out =
s_Out
+ "arr["
+ String.valueOf(n)
+ "]=new Array(\""
+ s_FileName
+ "\", \""
+ String.valueOf(convertFileSize(filelist[i].length()))
+ "\",\""
+ formatDate(new Date(filelist[i].lastModified()))
+ "\");\n";
}
}
}
}
}
s_Out =
"var arr = new Array();\n"
+ s_Out
+ "parent.setFileList('"
+ s_ReturnFlag
+ "', '"
+ s_FolderType
+ "', '"
+ s_Dir
+ "', arr);";
out.print(getOutScript(s_Out));
} else {
s_Out = "var arrUpload = new Array();\n";
s_Out += "var arrShareImage = new Array();\n";
s_Out += "var arrShareFlash = new Array();\n";
s_Out += "var arrShareMedia = new Array();\n";
s_Out += "var arrShareOther = new Array();\n";
s_Out += GetFolderTree(sUploadDir, "Upload", 1, 0).get(0).toString();
sAllowExt = "";
if (sType.equals("FILE")) {
s_Out += GetFolderTree(sPathShareImage, "ShareImage", 1, 0).get(0).toString();
s_Out += GetFolderTree(sPathShareFlash, "ShareFlash", 1, 0).get(0).toString();
s_Out += GetFolderTree(sPathShareMedia, "ShareMedia", 1, 0).get(0).toString();
s_Out += GetFolderTree(sPathShareOther, "ShareOther", 1, 0).get(0).toString();
} else if (sType.equals("MEDIA")) {
s_Out += GetFolderTree(sPathShareMedia, "ShareMedia", 1, 0).get(0).toString();
} else if (sType.equals("FLASH")) {
s_Out += GetFolderTree(sPathShareFlash, "ShareFlash", 1, 0).get(0).toString();
} else {
s_Out += GetFolderTree(sPathShareImage, "ShareImage", 1, 0).get(0).toString();
}
s_Out +=
"parent.setFolderList(arrUpload, arrShareImage, arrShareFlash, arrShareMedia, arrShareOther);";
out.print(getOutScript(s_Out));
}
}
private void cleanup(File directory) {
// Clean up from old installations, removing or renaming files.
// Note that directory is the parent of the CTP directory
// unless the original installation was done by Bill Weadock's
// all-in-one installer for Windows.
// Get a file pointing to the CTP directory.
// This might be the current directory, or
// it might be the CTP child.
File dir;
if (directory.getName().equals("RSNA")) dir = directory;
else dir = new File(directory, "CTP");
// If CTP.jar exists in this directory, it is a really
// old CTP main file - not used anymore
File ctp = new File(dir, "CTP.jar");
if (ctp.exists()) ctp.delete();
// These are old names for the Launcher.jar file
File launcher = new File(dir, "CTP-launcher.jar");
if (launcher.exists()) launcher.delete();
launcher = new File(dir, "TFS-launcher.jar");
if (launcher.exists()) launcher.delete();
// Delete the obsolete CTP-runner.jar file
File runner = new File(dir, "CTP-runner.jar");
if (runner.exists()) runner.delete();
// Delete the obsolete MIRC-copier.jar file
File copier = new File(dir, "MIRC-copier.jar");
if (copier.exists()) copier.delete();
// Rename the old versions of the properties files
File oldprops = new File(dir, "CTP-startup.properties");
File newprops = new File(dir, "CTP-launcher.properties");
File correctprops = new File(dir, "Launcher.properties");
if (oldprops.exists()) {
if (newprops.exists() || correctprops.exists()) oldprops.delete();
else oldprops.renameTo(correctprops);
}
if (newprops.exists()) {
if (correctprops.exists()) newprops.delete();
else newprops.renameTo(correctprops);
}
// Get rid of obsolete startup and shutdown programs
File startup = new File(dir, "CTP-startup.jar");
if (startup.exists()) startup.delete();
File shutdown = new File(dir, "CTP-shutdown.jar");
if (shutdown.exists()) shutdown.delete();
// Get rid of the obsolete linux directory
File linux = new File(dir, "linux");
if (linux.exists()) {
startup = new File(linux, "CTP-startup.jar");
if (startup.exists()) startup.delete();
shutdown = new File(linux, "CTP-shutdown.jar");
if (shutdown.exists()) shutdown.delete();
linux.delete();
}
// clean up the libraries directory
File libraries = new File(dir, "libraries");
if (libraries.exists()) {
// remove obsolete versions of the slf4j libraries
// and the dcm4che-imageio libraries
File[] files = libraries.listFiles();
for (File file : files) {
if (file.isFile()) {
String name = file.getName();
if (name.startsWith("slf4j-") || name.startsWith("dcm4che-imageio-rle")) {
file.delete();
}
}
}
// remove the email subdirectory
File email = new File(libraries, "email");
deleteAll(email);
// remove the xml subdirectory
File xml = new File(libraries, "xml");
deleteAll(xml);
// remove the sftp subdirectory
File sftp = new File(libraries, "sftp");
deleteAll(xml);
// move edtftpj.jar to the ftp directory
File edtftpj = new File(libraries, "edtftpj.jar");
if (edtftpj.exists()) {
File ftp = new File(libraries, "ftp");
ftp.mkdirs();
File ftpedtftpj = new File(ftp, "edtftpj.jar");
edtftpj.renameTo(ftpedtftpj);
}
}
// remove the obsolete xml library under dir
File xml = new File(dir, "xml");
deleteAll(xml);
// remove the dicom profiles so any
// obsolete files will disappear
File profiles = new File(dir, "profiles");
File dicom = new File(profiles, "dicom");
deleteAll(dicom);
dicom.mkdirs();
// Remove the index.html file so it will be rebuilt from
// example-index.html when the system next starts.
File root = new File(dir, "ROOT");
if (root.exists()) {
File index = new File(root, "index.html");
index.delete();
}
}
private File getFile(File dir, String nameStart, String nameEnd) {
File[] files = dir.listFiles(new NameFilter(nameStart, nameEnd));
if (files.length == 0) return null;
return files[0];
}
private static void copy(
@NotNull File src,
@NotNull File dest,
ConfigImportSettings settings,
File oldInstallationHome)
throws IOException {
src = src.getCanonicalFile();
dest = dest.getCanonicalFile();
if (!src.isDirectory()) {
throw new IOException(
ApplicationBundle.message(
"config.import.invalid.directory.error", src.getAbsolutePath()));
}
if (!dest.isDirectory()) {
throw new IOException(
ApplicationBundle.message(
"config.import.invalid.directory.error", dest.getAbsolutePath()));
}
if (FileUtil.filesEqual(src, dest)) {
return;
}
FileUtil.ensureExists(dest);
File[] childFiles =
src.listFiles(
new FilenameFilter() {
@Override
public boolean accept(@NotNull File dir, @NotNull String name) {
// Don't copy plugins just imported. They're most probably incompatible with newer
// idea version.
return !StringUtil.startsWithChar(name, '.') && !name.equals(PLUGINS_PATH);
}
});
if (childFiles == null || childFiles.length == 0) {
return;
}
for (File from : childFiles) {
File to = new File(dest, from.getName());
if (from.isDirectory()) {
FileUtil.copyDir(from, to, false);
} else {
FileUtil.copy(from, to);
}
}
File plugins = new File(src, PLUGINS_PATH);
if (!loadOldPlugins(plugins, dest) && SystemInfo.isMac) {
File oldPluginsDir =
getOldPath(
oldInstallationHome,
settings,
PathManager.PROPERTY_PLUGINS_PATH,
new Function<String, String>() {
@Override
public String fun(String pathSelector) {
return PathManager.getDefaultPluginPathFor(pathSelector);
}
});
if (oldPluginsDir == null) {
// e.g. installation home referred to config home. Try with default selector, same as config
// name
oldPluginsDir = new File(PathManager.getDefaultPluginPathFor(src.getName()));
}
loadOldPlugins(oldPluginsDir, dest);
}
}
public QSAdminGUI(QSAdminMain qsadminMain, JFrame parentFrame) {
this.parentFrame = parentFrame;
Container cp = this;
qsadminMain.setGUI(this);
cp.setLayout(new BorderLayout(5, 5));
headerPanel = new HeaderPanel(qsadminMain, parentFrame);
mainCommandPanel = new MainCommandPanel(qsadminMain);
cmdConsole = new CmdConsole(qsadminMain);
propertiePanel = new PropertiePanel(qsadminMain);
if (headerPanel == null
|| mainCommandPanel == null
|| cmdConsole == null
|| propertiePanel == null) {
throw new RuntimeException("Loading of one of gui component failed.");
}
headerPanel.setBorder(BorderFactory.createEmptyBorder(0, 5, 0, 5));
cp.add(headerPanel, BorderLayout.NORTH);
JScrollPane propertieScrollPane = new JScrollPane(propertiePanel);
// JScrollPane commandScrollPane = new JScrollPane(mainCommandPanel);
JSplitPane splitPane =
new JSplitPane(JSplitPane.HORIZONTAL_SPLIT, true, mainCommandPanel, cmdConsole);
splitPane.setOneTouchExpandable(false);
splitPane.setDividerLocation(250);
// splitPane.setDividerLocation(0.70);
tabbedPane = new JTabbedPane(JTabbedPane.TOP);
tabbedPane.addTab("Main", ball, splitPane, "Main Commands");
tabbedPane.addTab("Get/Set", ball, propertieScrollPane, "Properties Panel");
QSAdminPluginConfig qsAdminPluginConfig = null;
PluginPanel pluginPanel = null;
// -- start of loadPlugins
try {
File xmlFile = null;
ClassLoader classLoader = null;
Class mainClass = null;
File file = new File(pluginDir);
File dirs[] = null;
if (file.canRead()) dirs = file.listFiles(new DirFileList());
for (int i = 0; dirs != null && i < dirs.length; i++) {
xmlFile = new File(dirs[i].getAbsolutePath() + File.separator + "plugin.xml");
if (xmlFile.canRead()) {
qsAdminPluginConfig = PluginConfigReader.read(xmlFile);
if (qsAdminPluginConfig.getActive().equals("yes")
&& qsAdminPluginConfig.getType().equals("javax.swing.JPanel")) {
classLoader = ClassUtil.getClassLoaderFromJars(dirs[i].getAbsolutePath());
mainClass = classLoader.loadClass(qsAdminPluginConfig.getMainClass());
logger.fine("Got PluginMainClass " + mainClass);
pluginPanel = (PluginPanel) mainClass.newInstance();
if (JPanel.class.isInstance(pluginPanel) == true) {
logger.info("Loading plugin : " + qsAdminPluginConfig.getName());
pluginPanelMap.put("" + (2 + i), pluginPanel);
plugins.add(pluginPanel);
tabbedPane.addTab(
qsAdminPluginConfig.getName(),
ball,
(JPanel) pluginPanel,
qsAdminPluginConfig.getDesc());
pluginPanel.setQSAdminMain(qsadminMain);
pluginPanel.init();
}
} else {
logger.info(
"Plugin "
+ dirs[i]
+ " is disabled so skipping "
+ qsAdminPluginConfig.getActive()
+ ":"
+ qsAdminPluginConfig.getType());
}
} else {
logger.info("No plugin configuration found in " + xmlFile + " so skipping");
}
}
} catch (Exception e) {
logger.warning("Error loading plugin : " + e);
logger.fine("StackTrace:\n" + MyString.getStackTrace(e));
}
// -- end of loadPlugins
tabbedPane.addChangeListener(
new ChangeListener() {
int selected = -1;
int oldSelected = -1;
public void stateChanged(ChangeEvent e) {
// if plugin
selected = tabbedPane.getSelectedIndex();
if (selected >= 2) {
((PluginPanel) pluginPanelMap.get("" + selected)).activated();
}
if (oldSelected >= 2) {
((PluginPanel) pluginPanelMap.get("" + oldSelected)).deactivated();
}
oldSelected = selected;
}
});
// tabbedPane.setBorder(BorderFactory.createEmptyBorder(0,5,5,5));
cp.add(tabbedPane, BorderLayout.CENTER);
buildMenu();
}
public void secureImport() {
JFileChooser imp = new JFileChooser();
imp.setFileSelectionMode(JFileChooser.FILES_AND_DIRECTORIES);
imp.setMultiSelectionEnabled(true);
int ret = imp.showOpenDialog(frm);
if (ret != JFileChooser.APPROVE_OPTION) {
return;
}
File[] fis = imp.getSelectedFiles();
ArrayList<String> impJobs = new ArrayList<String>();
boolean dirs = false;
for (File fi : fis) {
if (fi.isDirectory()) {
dirs = true;
File lib = new File(fi, LIBRARY_NAME);
if (lib.exists()) {
try {
Scanner sca = new Scanner(lib);
while (sca.hasNextLine()) {
String nm = sca.nextLine();
String date = sca.nextLine();
String tags = sca.nextLine();
File addr = new File(fi, nm);
if (addr.exists() && !addr.isDirectory()) impJobs.add(impJob(addr, date, tags));
}
sca.close();
} catch (IOException exc) {
// add nothing?
}
} else {
for (File cont : fi.listFiles())
if (!cont.isDirectory()) impJobs.add(impJob(cont, null, null));
}
} else {
impJobs.add(impJob(fi, null, null));
}
}
if (impJobs.size() > 1 || dirs) { // dont bother user if selected single file
String shw = "Importing:";
if (impJobs.size() > 30) shw = null;
int pcount = 0;
for (String jb : impJobs) {
String[] prts = jb.split(",", 4); // import jobs have 4 parts, import, name, date, tags
if (shw != null) shw = shw + "\n - " + new File(prts[1]).getName();
if (!prts[3].equalsIgnoreCase(Storage.NEW_TAG)) {
pcount++;
if (shw != null) shw = shw + " []";
}
}
if (shw == null) shw = "importing ";
else shw = shw + "\n";
shw = shw + impJobs.size() + "(" + pcount + ") files";
if (JOptionPane.showConfirmDialog(frm, shw, "Confirm Import", JOptionPane.YES_NO_OPTION)
!= JOptionPane.YES_OPTION) return;
}
synchronized (jobs) {
for (String j : impJobs) {
if (priorityExport) jobs.addLast(j);
else jobs.addFirst(j);
}
}
updateStatus();
}
public void run() {
// String a =
// "http://neuromorpho.org/neuroMorpho/dableFiles/borst/CNG%20version/dCH-cobalt.CNG.swc"; //
// For developer use
if (myArgs.length == 0) {
String usage =
"\nError, missing SWC file containing morphology!\n\nUsage: \n java -cp build cvapp.main swc_file [-test]"
+ "\n or:\n ./run.sh swc_file ["
+ TEST_FLAG
+ "|"
+ TEST_NOGUI_FLAG
+ "|"
+ NEUROML1_EXPORT_FLAG
+ "|"
+ NEUROML2_EXPORT_FLAG
+ "]\n\n"
+ "where swc_file is the file name or URL of the SWC morphology file\n";
System.out.println(usage);
System.exit(0);
}
String a = myArgs[0];
File baseDir = new File(".");
if ((new File(a)).exists()) {
baseDir = (new File(a)).getParentFile();
}
try {
File root =
new File(main.class.getProtectionDomain().getCodeSource().getLocation().toURI().getPath())
.getParentFile();
if (!a.startsWith("http://") && !a.startsWith("file://")) {
a = "file://" + (new File(a)).getCanonicalPath();
}
boolean supressGui = false;
if (myArgs.length == 2
&& (myArgs[1].equals(TEST_NOGUI_FLAG)
|| myArgs[1].equals(NEUROML1_EXPORT_FLAG)
|| myArgs[1].equals(NEUROML2_EXPORT_FLAG))) {
supressGui = true;
}
neuronEditorFrame nef = null;
nef = new neuronEditorFrame(700, 600, supressGui);
// nef.validate();
nef.pack();
centerWindow(nef);
nef.setVisible(!supressGui);
nef.setReadWrite(true, true);
int indexof = a.lastIndexOf('/') + 1;
String directory = a.substring(0, indexof);
String fileName = a.substring(indexof, a.length());
URL u = new URL(a);
String sdata[] = readStringArrayFromURL(u);
nef.setTitle("3DViewer (Modified from CVAPP with permission)-Neuron: " + fileName);
nef.loadFile(sdata, directory, fileName);
System.out.println("Loaded: " + fileName);
if (myArgs.length == 2 && myArgs[1].equals(TEST_ONE_FLAG)) {
// Thread.sleep(1000);
doTests(nef, fileName);
} else if (myArgs.length == 2 && myArgs[1].equals(NEUROML1_EXPORT_FLAG)) {
File rootFile = (new File(baseDir, fileName)).getAbsoluteFile();
String nml1FileName =
rootFile.getName().endsWith(".swc")
? rootFile.getName().substring(0, rootFile.getName().length() - 4) + ".xml"
: rootFile.getName() + ".xml";
File nml1File = new File(rootFile.getParentFile(), nml1FileName);
neuronEditorPanel nep = nef.getNeuronEditorPanel();
nep.writeStringToFile(nep.getCell().writeNeuroML_v1_8_1(), nml1File.getAbsolutePath());
System.out.println(
"Saved NeuroML representation of the file to: "
+ nml1File.getAbsolutePath()
+ ": "
+ nml1File.exists());
File v1schemaFile = new File(root, "Schemas/v1.8.1/Level3/NeuroML_Level3_v1.8.1.xsd");
validateXML(nml1File, v1schemaFile);
System.exit(0);
} else if (myArgs.length == 2 && myArgs[1].equals(NEUROML2_EXPORT_FLAG)) {
File rootFile = (new File(baseDir, fileName)).getAbsoluteFile();
String nml2FileName =
rootFile.getName().endsWith(".swc")
? rootFile.getName().substring(0, rootFile.getName().length() - 4) + ".cell.nml"
: rootFile.getName() + ".cell.nml";
if (Character.isDigit(nml2FileName.charAt(0))) {
nml2FileName = "Cell_" + nml2FileName;
}
File nml2File = new File(rootFile.getParentFile(), nml2FileName);
neuronEditorPanel nep = nef.getNeuronEditorPanel();
nep.writeStringToFile(nep.getCell().writeNeuroML_v2beta(), nml2File.getAbsolutePath());
System.out.println(
"Saved the NeuroML representation of the file to: "
+ nml2File.getAbsolutePath()
+ ": "
+ nml2File.exists());
validateXML(nml2File, new File(root, "Schemas/v2/NeuroML_v2beta4.xsd"));
System.exit(0);
} else if (myArgs.length == 2
&& (myArgs[1].equals(TEST_FLAG) || (myArgs[1].equals(TEST_NOGUI_FLAG)))) {
// Thread.sleep(1000);
doTests(nef, fileName);
File exampleDir = new File("twoCylSwc");
for (File f : exampleDir.listFiles()) {
if (f.getName().endsWith(".swc")) {
sdata = fileString.readStringArrayFromFile(f.getAbsolutePath());
nef.setTitle("3DViewer (Modified from CVAPP with permission)-Neuron: " + f.getName());
nef.loadFile(sdata, f.getParent(), f.getName());
doTests(nef, f.getAbsolutePath());
}
}
exampleDir = new File("spherSomaSwc");
for (File f : exampleDir.listFiles()) {
if (f.getName().endsWith(".swc")) {
sdata = fileString.readStringArrayFromFile(f.getAbsolutePath());
nef.setTitle("3DViewer (Modified from CVAPP with permission)-Neuron: " + f.getName());
nef.loadFile(sdata, f.getParent(), f.getName());
doTests(nef, f.getAbsolutePath());
}
}
exampleDir = new File("caseExamples");
for (File f : exampleDir.listFiles()) {
if (f.getName().endsWith(".swc")) {
sdata = fileString.readStringArrayFromFile(f.getAbsolutePath());
nef.setTitle("3DViewer (Modified from CVAPP with permission)-Neuron: " + f.getName());
nef.loadFile(sdata, f.getParent(), f.getName());
doTests(nef, f.getAbsolutePath());
}
}
if (supressGui) System.exit(0);
}
} catch (Exception exception) {
System.err.println("Error while handling SWC file (" + a + ")");
exception.printStackTrace();
}
}