Example #1
0
  /** returns the literal value of the node reachable from subject via predicate */
  public static String getObjectLiteral(Model r, Resource subject, Resource predicate)
      throws ModelException {

    RDFNode obj = getObject(r, subject, predicate);
    if (obj instanceof Literal) return obj.toString();
    else return null;
  }
  /**
   * Query SPARQL endpoint with a SELECT query
   *
   * @param qExec QueryExecution encapsulating the query
   * @return model retrieved by querying the endpoint
   */
  private Model getSelectModel(QueryExecution qExec) {
    Model model = ModelFactory.createDefaultModel();
    Graph graph = model.getGraph();
    ResultSet results = qExec.execSelect();

    while (results.hasNext()) {
      QuerySolution sol = results.next();
      String subject;
      String predicate;
      RDFNode object;

      try {
        subject = sol.getResource("s").toString();
        predicate = sol.getResource("p").toString();
        object = sol.get("o");
      } catch (NoSuchElementException e) {
        logger.error("SELECT query does not return a (?s ?p ?o) Triple");
        continue;
      }

      Node objNode;
      if (object.isLiteral()) {
        Literal obj = object.asLiteral();
        objNode = NodeFactory.createLiteral(obj.getString(), obj.getDatatype());
      } else {
        objNode = NodeFactory.createLiteral(object.toString());
      }

      graph.add(
          new Triple(NodeFactory.createURI(subject), NodeFactory.createURI(predicate), objNode));
    }

    return model;
  }
 protected static void addRangeTypes(Model result, Model schema) {
   Model toAdd = ModelFactory.createDefaultModel();
   for (StmtIterator it = schema.listStatements(ANY, RDFS.range, ANY); it.hasNext(); ) {
     Statement s = it.nextStatement();
     RDFNode type = s.getObject();
     Property property = s.getSubject().as(Property.class);
     for (StmtIterator x = result.listStatements(ANY, property, ANY); x.hasNext(); ) {
       RDFNode ob = x.nextStatement().getObject();
       if (ob.isResource()) toAdd.add((Resource) ob, RDF.type, type);
     }
   }
   result.add(toAdd);
 }
 public Collection<URI> getSupportedFacets(URI needUri) throws NoSuchNeedException {
   List<URI> ret = new LinkedList<URI>();
   Need need = DataAccessUtils.loadNeed(needRepository, needUri);
   Model content = rdfStorageService.loadContent(need);
   if (content == null) return ret;
   Resource baseRes = content.getResource(content.getNsPrefixURI(""));
   StmtIterator stmtIterator = baseRes.listProperties(WON.HAS_FACET);
   while (stmtIterator.hasNext()) {
     RDFNode object = stmtIterator.nextStatement().getObject();
     if (object.isURIResource()) {
       ret.add(URI.create(object.toString()));
     }
   }
   return ret;
 }
  /**
   * Builds a String result for Elastic Search from an RDFNode
   *
   * @param node An RDFNode representing the value of a property for a given resource
   * @return If the RDFNode has a Literal value, among Boolean, Byte, Double, Float, Integer Long,
   *     Short, this value is returned, converted to String
   *     <p>If the RDFNode has a String Literal value, this value will be returned, surrounded by
   *     double quotes
   *     <p>If the RDFNode has a Resource value (URI) and toDescribeURIs is set to true, the value
   *     of @getLabelForUri for the resource is returned, surrounded by double quotes. Otherwise,
   *     the URI will be returned
   */
  private String getStringForResult(RDFNode node, boolean getNodeLabel) {
    String result = "";
    boolean quote = false;

    if (node.isLiteral()) {
      Object literalValue = node.asLiteral().getValue();
      try {
        Class<?> literalJavaClass = node.asLiteral().getDatatype().getJavaClass();

        if (literalJavaClass.equals(Boolean.class)
            || Number.class.isAssignableFrom(literalJavaClass)) {

          result += literalValue;
        } else {
          result = EEASettings.parseForJson(node.asLiteral().getLexicalForm());
          quote = true;
        }
      } catch (java.lang.NullPointerException npe) {
        result = EEASettings.parseForJson(node.asLiteral().getLexicalForm());
        quote = true;
      }

    } else if (node.isResource()) {
      result = node.asResource().getURI();
      if (getNodeLabel) {
        result = getLabelForUri(result);
      }
      quote = true;
    }
    if (quote) {
      result = "\"" + result + "\"";
    }
    return result;
  }
Example #6
0
 /** Answer the resource at the end of the path, if defined, or null */
 public Resource getTerminalResource() {
   RDFNode n = getTerminal();
   return (n != null && n.isResource()) ? (Resource) n : null;
 }
Example #7
0
 /** Answer true if the last link on the path has object equal to <code>n</code> */
 public boolean hasTerminus(RDFNode n) {
   return n != null && n.equals(getTerminal());
 }
  public static void main(String[] args) {

    List<String> obj = new ArrayList<String>();

    Scanner input = new Scanner(System.in);

    System.out.print("Enter URI: ");

    String userIn = input.nextLine();

    // create an empty Model
    Model model = ModelFactory.createDefaultModel();

    // read the RDF/XML file
    model.read(userIn);

    // write it to standard out
    // model.write(System.out);

    // list the statements in the Model
    StmtIterator iter = model.listStatements();

    System.out.println();

    // print out the predicate, subject and object of each statement
    while (iter.hasNext()) {
      Statement stmt = iter.nextStatement(); // get next statement
      Resource subject = stmt.getSubject(); // get the subject
      Property predicate = stmt.getPredicate(); // get the predicate
      RDFNode object = stmt.getObject(); // get the object

      System.out.print(subject.toString());
      System.out.print(" -> " + predicate.toString() + " -> ");
      if (object instanceof Resource) {
        System.out.print(object.toString() + "\n");
      } else {
        // object is a literal
        System.out.print(" \"" + object.toString() + "\"\n");
      }
    }

    /* for(int i = 0; i < (obj.size()); i++){

    	String sparqlQueryString1=
    								"SELECT ?s ?o "+
    								"WHERE {"+
    								"?s ?p ?o ."+
    								"?o <bif:contains> \""+obj.get(i)+"\" ."+
    								"}"+
    								"limit 10";

    		      Query query = QueryFactory.create(sparqlQueryString1);
    		      QueryExecution qexec = QueryExecutionFactory.sparqlService("http://pubmed.bio2rdf.org/sparql", query);

    		      ResultSet results = qexec.execSelect();
    		      System.out.println("Query: "+obj.get(i));
    		      ResultSetFormatter.out(System.out, results, query);

    		     qexec.close() ;
    } */

  }
Example #9
0
  /**
   * This method is used to compute the hash code of RDF statements. All implementation of
   * org.w3c.rdf.model.Statement MUST use this method. The hash code is computed as
   *
   * <blockquote>
   *
   * <pre>
   * ((s.hashCode() * 7) + p.hashCode()) * 7 + o.hashCode()
   * </pre>
   *
   * </blockquote>
   */
  public static int statementHashCode(Resource s, Resource p, RDFNode o) {

    return ((s.hashCode() * 7) + p.hashCode()) * 7 + o.hashCode();
  }
  /**
   * Get JSON map for a given resource by applying the river settings
   *
   * @param rs resource being processed
   * @param properties properties to be indexed
   * @param model model returned by the indexing query
   * @param getPropLabel if set to true all URI property values will be indexed as their label. The
   *     label is taken as the value of one of the properties set in {@link #uriDescriptionList}.
   * @return map of properties to be indexed for res
   */
  private Map<String, ArrayList<String>> getJsonMap(
      Resource rs, Set<Property> properties, Model model, boolean getPropLabel) {
    Map<String, ArrayList<String>> jsonMap = new HashMap<String, ArrayList<String>>();
    ArrayList<String> results = new ArrayList<String>();

    if (addUriForResource) {
      results.add("\"" + rs.toString() + "\"");
      jsonMap.put("http://www.w3.org/1999/02/22-rdf-syntax-ns#about", results);
    }

    Set<String> rdfLanguages = new HashSet<String>();

    for (Property prop : properties) {
      NodeIterator niter = model.listObjectsOfProperty(rs, prop);
      String property = prop.toString();
      results = new ArrayList<String>();

      String lang;
      String currValue;

      while (niter.hasNext()) {
        RDFNode node = niter.next();
        currValue = getStringForResult(node, getPropLabel);
        if (addLanguage) {
          if (node.isLiteral()) {
            lang = node.asLiteral().getLanguage();
            if (!lang.isEmpty()) {
              rdfLanguages.add("\"" + lang + "\"");
            }
          }
        }

        String shortValue = currValue;

        int currLen = currValue.length();
        // Unquote string
        if (currLen > 1) shortValue = currValue.substring(1, currLen - 1);

        // If either whiteMap does contains shortValue
        // or blackMap contains the value
        // skip adding it to the index
        boolean whiteMapCond =
            whiteMap.containsKey(property) && !whiteMap.get(property).contains(shortValue);
        boolean blackMapCond =
            blackMap.containsKey(property) && blackMap.get(property).contains(shortValue);

        if (whiteMapCond || blackMapCond) {
          continue;
        }

        if (normalizeObj.containsKey(shortValue)) {
          results.add("\"" + normalizeObj.get(shortValue) + "\"");
        } else {
          results.add(currValue);
        }
      }

      // Do not index empty properties
      if (results.isEmpty()) continue;

      if (normalizeProp.containsKey(property)) {
        property = normalizeProp.get(property);
        if (jsonMap.containsKey(property)) {
          jsonMap.get(property).addAll(results);
        } else {
          jsonMap.put(property, results);
        }
      } else {
        jsonMap.put(property, results);
      }
    }

    if (addLanguage) {
      if (rdfLanguages.isEmpty() && !language.isEmpty()) rdfLanguages.add(language);
      if (!rdfLanguages.isEmpty()) jsonMap.put("language", new ArrayList<String>(rdfLanguages));
    }

    for (Map.Entry<String, String> it : normalizeMissing.entrySet()) {
      if (!jsonMap.containsKey(it.getKey())) {
        ArrayList<String> res = new ArrayList<String>();
        res.add("\"" + it.getValue() + "\"");
        jsonMap.put(it.getKey(), res);
      }
    }

    return jsonMap;
  }