/** returns the literal value of the node reachable from subject via predicate */
public static String getObjectLiteral(Model r, Resource subject, Resource predicate)
throws ModelException {
RDFNode obj = getObject(r, subject, predicate);
if (obj instanceof Literal) return obj.toString();
else return null;
}
/**
* Query SPARQL endpoint with a SELECT query
*
* @param qExec QueryExecution encapsulating the query
* @return model retrieved by querying the endpoint
*/
private Model getSelectModel(QueryExecution qExec) {
Model model = ModelFactory.createDefaultModel();
Graph graph = model.getGraph();
ResultSet results = qExec.execSelect();
while (results.hasNext()) {
QuerySolution sol = results.next();
String subject;
String predicate;
RDFNode object;
try {
subject = sol.getResource("s").toString();
predicate = sol.getResource("p").toString();
object = sol.get("o");
} catch (NoSuchElementException e) {
logger.error("SELECT query does not return a (?s ?p ?o) Triple");
continue;
}
Node objNode;
if (object.isLiteral()) {
Literal obj = object.asLiteral();
objNode = NodeFactory.createLiteral(obj.getString(), obj.getDatatype());
} else {
objNode = NodeFactory.createLiteral(object.toString());
}
graph.add(
new Triple(NodeFactory.createURI(subject), NodeFactory.createURI(predicate), objNode));
}
return model;
}
protected static void addRangeTypes(Model result, Model schema) {
Model toAdd = ModelFactory.createDefaultModel();
for (StmtIterator it = schema.listStatements(ANY, RDFS.range, ANY); it.hasNext(); ) {
Statement s = it.nextStatement();
RDFNode type = s.getObject();
Property property = s.getSubject().as(Property.class);
for (StmtIterator x = result.listStatements(ANY, property, ANY); x.hasNext(); ) {
RDFNode ob = x.nextStatement().getObject();
if (ob.isResource()) toAdd.add((Resource) ob, RDF.type, type);
}
}
result.add(toAdd);
}
public Collection<URI> getSupportedFacets(URI needUri) throws NoSuchNeedException {
List<URI> ret = new LinkedList<URI>();
Need need = DataAccessUtils.loadNeed(needRepository, needUri);
Model content = rdfStorageService.loadContent(need);
if (content == null) return ret;
Resource baseRes = content.getResource(content.getNsPrefixURI(""));
StmtIterator stmtIterator = baseRes.listProperties(WON.HAS_FACET);
while (stmtIterator.hasNext()) {
RDFNode object = stmtIterator.nextStatement().getObject();
if (object.isURIResource()) {
ret.add(URI.create(object.toString()));
}
}
return ret;
}
/**
* Builds a String result for Elastic Search from an RDFNode
*
* @param node An RDFNode representing the value of a property for a given resource
* @return If the RDFNode has a Literal value, among Boolean, Byte, Double, Float, Integer Long,
* Short, this value is returned, converted to String
* <p>If the RDFNode has a String Literal value, this value will be returned, surrounded by
* double quotes
* <p>If the RDFNode has a Resource value (URI) and toDescribeURIs is set to true, the value
* of @getLabelForUri for the resource is returned, surrounded by double quotes. Otherwise,
* the URI will be returned
*/
private String getStringForResult(RDFNode node, boolean getNodeLabel) {
String result = "";
boolean quote = false;
if (node.isLiteral()) {
Object literalValue = node.asLiteral().getValue();
try {
Class<?> literalJavaClass = node.asLiteral().getDatatype().getJavaClass();
if (literalJavaClass.equals(Boolean.class)
|| Number.class.isAssignableFrom(literalJavaClass)) {
result += literalValue;
} else {
result = EEASettings.parseForJson(node.asLiteral().getLexicalForm());
quote = true;
}
} catch (java.lang.NullPointerException npe) {
result = EEASettings.parseForJson(node.asLiteral().getLexicalForm());
quote = true;
}
} else if (node.isResource()) {
result = node.asResource().getURI();
if (getNodeLabel) {
result = getLabelForUri(result);
}
quote = true;
}
if (quote) {
result = "\"" + result + "\"";
}
return result;
}
/** Answer the resource at the end of the path, if defined, or null */
public Resource getTerminalResource() {
RDFNode n = getTerminal();
return (n != null && n.isResource()) ? (Resource) n : null;
}
/** Answer true if the last link on the path has object equal to <code>n</code> */
public boolean hasTerminus(RDFNode n) {
return n != null && n.equals(getTerminal());
}
public static void main(String[] args) {
List<String> obj = new ArrayList<String>();
Scanner input = new Scanner(System.in);
System.out.print("Enter URI: ");
String userIn = input.nextLine();
// create an empty Model
Model model = ModelFactory.createDefaultModel();
// read the RDF/XML file
model.read(userIn);
// write it to standard out
// model.write(System.out);
// list the statements in the Model
StmtIterator iter = model.listStatements();
System.out.println();
// print out the predicate, subject and object of each statement
while (iter.hasNext()) {
Statement stmt = iter.nextStatement(); // get next statement
Resource subject = stmt.getSubject(); // get the subject
Property predicate = stmt.getPredicate(); // get the predicate
RDFNode object = stmt.getObject(); // get the object
System.out.print(subject.toString());
System.out.print(" -> " + predicate.toString() + " -> ");
if (object instanceof Resource) {
System.out.print(object.toString() + "\n");
} else {
// object is a literal
System.out.print(" \"" + object.toString() + "\"\n");
}
}
/* for(int i = 0; i < (obj.size()); i++){
String sparqlQueryString1=
"SELECT ?s ?o "+
"WHERE {"+
"?s ?p ?o ."+
"?o <bif:contains> \""+obj.get(i)+"\" ."+
"}"+
"limit 10";
Query query = QueryFactory.create(sparqlQueryString1);
QueryExecution qexec = QueryExecutionFactory.sparqlService("http://pubmed.bio2rdf.org/sparql", query);
ResultSet results = qexec.execSelect();
System.out.println("Query: "+obj.get(i));
ResultSetFormatter.out(System.out, results, query);
qexec.close() ;
} */
}
/**
* This method is used to compute the hash code of RDF statements. All implementation of
* org.w3c.rdf.model.Statement MUST use this method. The hash code is computed as
*
* <blockquote>
*
* <pre>
* ((s.hashCode() * 7) + p.hashCode()) * 7 + o.hashCode()
* </pre>
*
* </blockquote>
*/
public static int statementHashCode(Resource s, Resource p, RDFNode o) {
return ((s.hashCode() * 7) + p.hashCode()) * 7 + o.hashCode();
}
/**
* Get JSON map for a given resource by applying the river settings
*
* @param rs resource being processed
* @param properties properties to be indexed
* @param model model returned by the indexing query
* @param getPropLabel if set to true all URI property values will be indexed as their label. The
* label is taken as the value of one of the properties set in {@link #uriDescriptionList}.
* @return map of properties to be indexed for res
*/
private Map<String, ArrayList<String>> getJsonMap(
Resource rs, Set<Property> properties, Model model, boolean getPropLabel) {
Map<String, ArrayList<String>> jsonMap = new HashMap<String, ArrayList<String>>();
ArrayList<String> results = new ArrayList<String>();
if (addUriForResource) {
results.add("\"" + rs.toString() + "\"");
jsonMap.put("http://www.w3.org/1999/02/22-rdf-syntax-ns#about", results);
}
Set<String> rdfLanguages = new HashSet<String>();
for (Property prop : properties) {
NodeIterator niter = model.listObjectsOfProperty(rs, prop);
String property = prop.toString();
results = new ArrayList<String>();
String lang;
String currValue;
while (niter.hasNext()) {
RDFNode node = niter.next();
currValue = getStringForResult(node, getPropLabel);
if (addLanguage) {
if (node.isLiteral()) {
lang = node.asLiteral().getLanguage();
if (!lang.isEmpty()) {
rdfLanguages.add("\"" + lang + "\"");
}
}
}
String shortValue = currValue;
int currLen = currValue.length();
// Unquote string
if (currLen > 1) shortValue = currValue.substring(1, currLen - 1);
// If either whiteMap does contains shortValue
// or blackMap contains the value
// skip adding it to the index
boolean whiteMapCond =
whiteMap.containsKey(property) && !whiteMap.get(property).contains(shortValue);
boolean blackMapCond =
blackMap.containsKey(property) && blackMap.get(property).contains(shortValue);
if (whiteMapCond || blackMapCond) {
continue;
}
if (normalizeObj.containsKey(shortValue)) {
results.add("\"" + normalizeObj.get(shortValue) + "\"");
} else {
results.add(currValue);
}
}
// Do not index empty properties
if (results.isEmpty()) continue;
if (normalizeProp.containsKey(property)) {
property = normalizeProp.get(property);
if (jsonMap.containsKey(property)) {
jsonMap.get(property).addAll(results);
} else {
jsonMap.put(property, results);
}
} else {
jsonMap.put(property, results);
}
}
if (addLanguage) {
if (rdfLanguages.isEmpty() && !language.isEmpty()) rdfLanguages.add(language);
if (!rdfLanguages.isEmpty()) jsonMap.put("language", new ArrayList<String>(rdfLanguages));
}
for (Map.Entry<String, String> it : normalizeMissing.entrySet()) {
if (!jsonMap.containsKey(it.getKey())) {
ArrayList<String> res = new ArrayList<String>();
res.add("\"" + it.getValue() + "\"");
jsonMap.put(it.getKey(), res);
}
}
return jsonMap;
}
