Example #1
0
  // Look through the http-import directory and process all
  // the files there, oldest first. Note that these are actual
  // files, not queue elements.
  private void processHttpImportFiles() {
    File importDirFile = new File(TrialConfig.basepath + TrialConfig.httpImportDir);
    if (!importDirFile.exists()) return;
    File[] files = importDirFile.listFiles();
    for (int k = 0; k < files.length; k++) {
      File next = files[k];
      if (next.canRead() && next.canWrite()) {
        FileObject fileObject = FileObject.getObject(next);
        if (preprocess(fileObject)) {
          process(fileObject);
          if (!queueForDatabase(fileObject))
            Log.message(Quarantine.file(next, processorServiceName));
          else Log.message(processorServiceName + ": Processing complete: " + next.getName());
        }

        // If the file still exists, then there must be a bug
        // somewhere; log it and quarantine the file so we don't
        // fall into an infinite loop.
        if (next.exists()) {
          logger.warn(
              "File still in queue after processing:\n" + next + "The file will be quarantined.");
          Log.message(Quarantine.file(next, processorServiceName));
        }
        Thread.currentThread().yield();
      }
    }
  }
Example #2
0
 public static boolean deleteXmlDocument(String fileName) {
   File file = new File(fileName);
   if (!file.exists()) {
     return true;
   }
   if (!file.canWrite()) {
     return false;
   }
   return file.delete();
 }
Example #3
0
 public void run(String arg) {
   if (arg.equals("menus")) {
     updateMenus();
     return;
   }
   if (IJ.getApplet() != null) return;
   URL url = getClass().getResource("/ij/IJ.class");
   String ij_jar = url == null ? null : url.toString().replaceAll("%20", " ");
   if (ij_jar == null || !ij_jar.startsWith("jar:file:")) {
     error("Could not determine location of ij.jar");
     return;
   }
   int exclamation = ij_jar.indexOf('!');
   ij_jar = ij_jar.substring(9, exclamation);
   if (IJ.debugMode) IJ.log("Updater (jar loc): " + ij_jar);
   File file = new File(ij_jar);
   if (!file.exists()) {
     error("File not found: " + file.getPath());
     return;
   }
   if (!file.canWrite()) {
     String msg = "No write access: " + file.getPath();
     error(msg);
     return;
   }
   String[] list = openUrlAsList(IJ.URL + "/download/jars/list.txt");
   int count = list.length + 3;
   String[] versions = new String[count];
   String[] urls = new String[count];
   String uv = getUpgradeVersion();
   if (uv == null) return;
   versions[0] = "v" + uv;
   urls[0] = IJ.URL + "/upgrade/ij.jar";
   if (versions[0] == null) return;
   for (int i = 1; i < count - 2; i++) {
     String version = list[i - 1];
     versions[i] = version.substring(0, version.length() - 1); // remove letter
     urls[i] =
         IJ.URL + "/download/jars/ij" + version.substring(1, 2) + version.substring(3, 6) + ".jar";
   }
   versions[count - 2] = "daily build";
   urls[count - 2] = IJ.URL + "/ij.jar";
   versions[count - 1] = "previous";
   urls[count - 1] = IJ.URL + "/upgrade/ij2.jar";
   int choice = showDialog(versions);
   if (choice == -1 || !Commands.closeAll()) return;
   // System.out.println("choice: "+choice);
   // for (int i=0; i<urls.length; i++) System.out.println("  "+i+" "+urls[i]);
   byte[] jar = null;
   if ("daily build".equals(versions[choice]) && notes != null && notes.contains(" </title>"))
     jar = getJar("http://wsr.imagej.net/download/daily-build/ij.jar");
   if (jar == null) jar = getJar(urls[choice]);
   if (jar == null) {
     error("Unable to download ij.jar from " + urls[choice]);
     return;
   }
   Prefs.savePreferences();
   // System.out.println("saveJar: "+file);
   saveJar(file, jar);
   if (choice < count - 2) // force macro Function Finder to download fresh list
   new File(IJ.getDirectory("macros") + "functions.html").delete();
   System.exit(0);
 }
Example #4
0
 public void run(String arg) {
   if (arg.equals("menus")) {
     updateMenus();
     return;
   }
   if (IJ.getApplet() != null) return;
   // File file = new File(Prefs.getHomeDir() + File.separator + "ij.jar");
   // if (isMac() && !file.exists())
   //	file = new File(Prefs.getHomeDir() + File.separator +
   // "ImageJ.app/Contents/Resources/Java/ij.jar");
   URL url = getClass().getResource("/ij/IJ.class");
   String ij_jar = url == null ? null : url.toString().replaceAll("%20", " ");
   if (ij_jar == null || !ij_jar.startsWith("jar:file:")) {
     error("Could not determine location of ij.jar");
     return;
   }
   int exclamation = ij_jar.indexOf('!');
   ij_jar = ij_jar.substring(9, exclamation);
   if (IJ.debugMode) IJ.log("Updater: " + ij_jar);
   File file = new File(ij_jar);
   if (!file.exists()) {
     error("File not found: " + file.getPath());
     return;
   }
   if (!file.canWrite()) {
     String msg = "No write access: " + file.getPath();
     if (IJ.isVista()) msg += Prefs.vistaHint;
     error(msg);
     return;
   }
   String[] list = openUrlAsList(IJ.URL + "/download/jars/list.txt");
   int count = list.length + 2;
   String[] versions = new String[count];
   String[] urls = new String[count];
   String uv = getUpgradeVersion();
   if (uv == null) return;
   versions[0] = "v" + uv;
   urls[0] = IJ.URL + "/upgrade/ij.jar";
   if (versions[0] == null) return;
   for (int i = 1; i < count - 1; i++) {
     String version = list[i - 1];
     versions[i] = version.substring(0, version.length() - 1); // remove letter
     urls[i] =
         IJ.URL + "/download/jars/ij" + version.substring(1, 2) + version.substring(3, 6) + ".jar";
   }
   versions[count - 1] = "daily build";
   urls[count - 1] = IJ.URL + "/ij.jar";
   int choice = showDialog(versions);
   if (choice == -1) return;
   if (!versions[choice].startsWith("daily")
       && versions[choice].compareTo("v1.39") < 0
       && Menus.getCommands().get("ImageJ Updater") == null) {
     String msg =
         "This command is not available in versions of ImageJ prior\n"
             + "to 1.39 so you will need to install the plugin version at\n"
             + "<"
             + IJ.URL
             + "/plugins/imagej-updater.html>.";
     if (!IJ.showMessageWithCancel("Update ImageJ", msg)) return;
   }
   byte[] jar = getJar(urls[choice]);
   // file.renameTo(new File(file.getParent()+File.separator+"ij.bak"));
   if (version().compareTo("1.37v") >= 0) Prefs.savePreferences();
   // if (!renameJar(file)) return; // doesn't work on Vista
   saveJar(file, jar);
   if (choice < count - 1) // force macro Function Finder to download fresh list
   new File(IJ.getDirectory("macros") + "functions.html").delete();
   System.exit(0);
 }
  public void deinit(Appendable out, boolean force) throws Exception {
    Settings settings = new Settings(platform.getConfigFile());

    if (!force) {
      Justif justify = new Justif(80, 40);
      StringBuilder sb = new StringBuilder();
      Formatter f = new Formatter(sb);

      try {
        String list = listFiles(platform.getGlobal());
        if (list != null) {
          f.format("In global default environment:%n");
          f.format(list);
        }

        list = listFiles(platform.getLocal());
        if (list != null) {
          f.format("In local default environment:%n");
          f.format(list);
        }

        if (settings.containsKey(JPM_CACHE_GLOBAL)) {
          list = listFiles(IO.getFile(settings.get(JPM_CACHE_GLOBAL)));
          if (list != null) {
            f.format("In global configured environment:%n");
            f.format(list);
          }
        }

        if (settings.containsKey(JPM_CACHE_LOCAL)) {
          list = listFiles(IO.getFile(settings.get(JPM_CACHE_LOCAL)));
          if (list != null) {
            f.format("In local configured environment:%n");
            f.format(list);
          }
        }

        list = listSupportFiles();
        if (list != null) {
          f.format("jpm support files:%n");
          f.format(list);
        }

        f.format("%n%n");

        f.format(
            "All files listed above will be deleted if deinit is run with the force flag set"
                + " (\"jpm deinit -f\" or \"jpm deinit --force\"%n%n");
        f.flush();

        justify.wrap(sb);
        out.append(sb.toString());
      } finally {
        f.close();
      }
    } else { // i.e. if(force)
      int count = 0;
      File[] caches = {platform.getGlobal(), platform.getLocal(), null, null};
      if (settings.containsKey(JPM_CACHE_LOCAL)) {
        caches[2] = IO.getFile(settings.get(JPM_CACHE_LOCAL));
      }
      if (settings.containsKey(JPM_CACHE_GLOBAL)) {
        caches[3] = IO.getFile(settings.get(JPM_CACHE_GLOBAL));
      }
      ArrayList<File> toDelete = new ArrayList<File>();

      for (File cache : caches) {
        if (cache == null || !cache.exists()) {
          continue;
        }
        listFiles(cache, toDelete);
        if (toDelete.size() > count) {
          count = toDelete.size();
          if (!cache.canWrite()) {
            reporter.error(PERMISSION_ERROR + " (" + cache + ")");
            return;
          }
          toDelete.add(cache);
        }
      }
      listSupportFiles(toDelete);

      for (File f : toDelete) {
        if (f.exists() && !f.canWrite()) {
          reporter.error(PERMISSION_ERROR + " (" + f + ")");
        }
      }
      if (reporter.getErrors().size() > 0) {
        return;
      }

      for (File f : toDelete) {
        if (f.exists()) {
          IO.deleteWithException(f);
        }
      }
    }
  }
  public boolean hasAccess() {
    assert (binDir != null);
    assert (homeDir != null);

    return binDir.canWrite() && homeDir.canWrite();
  }
Example #7
0
 public static boolean fileCanBeSaved(File file) {
   return !fileExists(file) && file.canWrite();
 }
Example #8
0
  /** Does install of JRE */
  public static void install() {

    // Hide the JNLP Clients installer window and show own
    Config.getInstallService().hideStatusWindow();
    showInstallerWindow();

    // Make sure the destination exists.
    String path = Config.getInstallService().getInstallPath();
    if (Config.isWindowsInstall()) {
      String defaultLocation = "C:\\Program Files\\Java\\j2re" + Config.getJavaVersion() + "\\";
      File defaultDir = new File(defaultLocation);
      if (!defaultDir.exists()) {
        defaultDir.mkdirs();
      }
      if (defaultDir.exists() && defaultDir.canWrite()) {
        path = defaultLocation; // use default if you can
      }
    }

    File installDir = new File(path);

    if (!installDir.exists()) {
      installDir.mkdirs();
      if (!installDir.exists()) {
        // The installFailed string is only for debugging. No localization needed
        installFailed("couldntCreateDirectory", null);
        return;
      }
    }

    // Show license if neccesary
    enableStep(STEP_LICENSE);
    if (!showLicensing()) {
      // The installFailed string is only for debugging. No localization needed
      installFailed("Licensing was not accepted", null);
    }
    ;

    // Make sure that the data JAR is downloaded
    enableStep(STEP_DOWNLOAD);
    if (!downloadInstallerComponent()) {
      // The installFailed string is only for debugging. No localization needed
      installFailed("Unable to download data component", null);
    }

    String nativeLibName = Config.getNativeLibName();
    File installerFile = null;

    try {
      // Load native library into process if found
      if (nativeLibName != null && !Config.isSolarisInstall()) {
        System.loadLibrary(nativeLibName);
      }

      // Unpack installer
      enableStep(STEP_UNPACK);
      String installResource = Config.getInstallerResource();
      Config.trace("Installer resource: " + installResource);
      installerFile = unpackInstaller(installResource);

      // To clean-up downloaded files
      Config.trace("Unpacked installer to: " + installerFile);
      if (installerFile == null) {
        // The installFailed string is only for debugging. No localization needed
        installFailed("Could not unpack installer components", null);
        return;
      }

      enableStep(STEP_INSTALL);
      setStepText(STEP_INSTALL, Config.getWindowStepWait(STEP_INSTALL));

      boolean success = false;
      if (Config.isSolarisInstall()) {
        success = runSolarisInstaller(path, installerFile);
      } else {
        success = runWindowsInstaller(path, installerFile);
      }

      if (!success) {
        // The installFailed string is only for debugging. No localization needed
        installFailed("Could not run installer", null);
        return;
      }
    } catch (UnsatisfiedLinkError ule) {
      // The installFailed string is only for debugging. No localization needed
      installFailed("Unable to load library: " + nativeLibName, null);
      return;
    } finally {
      if (installerFile != null) {
        installerFile.delete();
      }
    }

    setStepText(STEP_INSTALL, Config.getWindowStep(STEP_INSTALL));
    enableStep(STEP_DONE);

    String execPath = path + Config.getJavaPath();
    Config.trace(execPath);

    /** Remove installer JAR from cache */
    removeInstallerComponent();

    // If we're running anything after 1.0.1 or not on Windows, just call
    // finishedInstall.  Otherwise, deny ExitVM permission so that we can
    // return here and do a reboot.  We have to do this because we need to
    // call ExtensionInstallerService.finishedInstall(), which registers
    // that our extension (the JRE) is installed.  Unfortunately pre-1.2 it
    // also does not understand that we are requesting a reboot, and calls
    // System.exit().  So for pre 1.2 we want to deny the permission to
    // exit the VM so we can return here and perform a reboot.
    boolean ispre12 = false;
    String version = Config.getJavaWSVersion();
    // get first tuple
    String v = version.substring(version.indexOf('-') + 1);
    int i2 = v.indexOf('.');
    int v1 = Integer.parseInt(v.substring(0, i2));
    // get second tuple
    v = v.substring(i2 + 1);
    i2 = v.indexOf('.');
    if (i2 == -1) i2 = v.indexOf('-');
    if (i2 == -1) i2 = v.indexOf('[');
    if (i2 == -1) i2 = v.length();
    int v2 = Integer.parseInt(v.substring(0, i2));
    // are we pre 1.2?
    if (v1 < 1 || (v1 == 1 && v2 < 2)) ispre12 = true;

    if (Config.isWindowsInstall() && ispre12 && Config.isHopper()) {
      // deny ExitVM permission then call finishedInstall
      ProtectionDomain pd = (new Object()).getClass().getProtectionDomain();
      CodeSource cs = pd.getCodeSource();
      AllPermissionExceptExitVM perm = new AllPermissionExceptExitVM();
      PermissionCollection newpc = perm.newPermissionCollection();
      newpc.add(perm);

      // run finishedInstall within the new context which excluded
      // just the ExitVM permission
      ProtectionDomain newpd = new ProtectionDomain(cs, newpc);
      AccessControlContext newacc = new AccessControlContext(new ProtectionDomain[] {newpd});
      final String fExecPath = execPath;
      try {
        AccessController.doPrivileged(
            new PrivilegedExceptionAction() {
              public Object run() throws SecurityException {
                finishedInstall(fExecPath);
                return null;
              }
            },
            newacc);
      } catch (PrivilegedActionException pae) {
        // swallow the exception because we want ExitVM to fail silent
      } catch (SecurityException se) {
        // swallow the exception because we want ExitVM to fail silent
      }
    } else {
      // just call finished Install
      finishedInstall(execPath);
    }

    if (Config.isWindowsInstall() && WindowsInstaller.IsRebootNecessary()) {
      // reboot
      if (!WindowsInstaller.askUserForReboot()) System.exit(0);
    } else {
      System.exit(0);
    }
  }