// Look through the http-import directory and process all
// the files there, oldest first. Note that these are actual
// files, not queue elements.
private void processHttpImportFiles() {
File importDirFile = new File(TrialConfig.basepath + TrialConfig.httpImportDir);
if (!importDirFile.exists()) return;
File[] files = importDirFile.listFiles();
for (int k = 0; k < files.length; k++) {
File next = files[k];
if (next.canRead() && next.canWrite()) {
FileObject fileObject = FileObject.getObject(next);
if (preprocess(fileObject)) {
process(fileObject);
if (!queueForDatabase(fileObject))
Log.message(Quarantine.file(next, processorServiceName));
else Log.message(processorServiceName + ": Processing complete: " + next.getName());
}
// If the file still exists, then there must be a bug
// somewhere; log it and quarantine the file so we don't
// fall into an infinite loop.
if (next.exists()) {
logger.warn(
"File still in queue after processing:\n" + next + "The file will be quarantined.");
Log.message(Quarantine.file(next, processorServiceName));
}
Thread.currentThread().yield();
}
}
}
public static boolean deleteXmlDocument(String fileName) {
File file = new File(fileName);
if (!file.exists()) {
return true;
}
if (!file.canWrite()) {
return false;
}
return file.delete();
}
public void run(String arg) {
if (arg.equals("menus")) {
updateMenus();
return;
}
if (IJ.getApplet() != null) return;
URL url = getClass().getResource("/ij/IJ.class");
String ij_jar = url == null ? null : url.toString().replaceAll("%20", " ");
if (ij_jar == null || !ij_jar.startsWith("jar:file:")) {
error("Could not determine location of ij.jar");
return;
}
int exclamation = ij_jar.indexOf('!');
ij_jar = ij_jar.substring(9, exclamation);
if (IJ.debugMode) IJ.log("Updater (jar loc): " + ij_jar);
File file = new File(ij_jar);
if (!file.exists()) {
error("File not found: " + file.getPath());
return;
}
if (!file.canWrite()) {
String msg = "No write access: " + file.getPath();
error(msg);
return;
}
String[] list = openUrlAsList(IJ.URL + "/download/jars/list.txt");
int count = list.length + 3;
String[] versions = new String[count];
String[] urls = new String[count];
String uv = getUpgradeVersion();
if (uv == null) return;
versions[0] = "v" + uv;
urls[0] = IJ.URL + "/upgrade/ij.jar";
if (versions[0] == null) return;
for (int i = 1; i < count - 2; i++) {
String version = list[i - 1];
versions[i] = version.substring(0, version.length() - 1); // remove letter
urls[i] =
IJ.URL + "/download/jars/ij" + version.substring(1, 2) + version.substring(3, 6) + ".jar";
}
versions[count - 2] = "daily build";
urls[count - 2] = IJ.URL + "/ij.jar";
versions[count - 1] = "previous";
urls[count - 1] = IJ.URL + "/upgrade/ij2.jar";
int choice = showDialog(versions);
if (choice == -1 || !Commands.closeAll()) return;
// System.out.println("choice: "+choice);
// for (int i=0; i<urls.length; i++) System.out.println(" "+i+" "+urls[i]);
byte[] jar = null;
if ("daily build".equals(versions[choice]) && notes != null && notes.contains(" </title>"))
jar = getJar("http://wsr.imagej.net/download/daily-build/ij.jar");
if (jar == null) jar = getJar(urls[choice]);
if (jar == null) {
error("Unable to download ij.jar from " + urls[choice]);
return;
}
Prefs.savePreferences();
// System.out.println("saveJar: "+file);
saveJar(file, jar);
if (choice < count - 2) // force macro Function Finder to download fresh list
new File(IJ.getDirectory("macros") + "functions.html").delete();
System.exit(0);
}
public void run(String arg) {
if (arg.equals("menus")) {
updateMenus();
return;
}
if (IJ.getApplet() != null) return;
// File file = new File(Prefs.getHomeDir() + File.separator + "ij.jar");
// if (isMac() && !file.exists())
// file = new File(Prefs.getHomeDir() + File.separator +
// "ImageJ.app/Contents/Resources/Java/ij.jar");
URL url = getClass().getResource("/ij/IJ.class");
String ij_jar = url == null ? null : url.toString().replaceAll("%20", " ");
if (ij_jar == null || !ij_jar.startsWith("jar:file:")) {
error("Could not determine location of ij.jar");
return;
}
int exclamation = ij_jar.indexOf('!');
ij_jar = ij_jar.substring(9, exclamation);
if (IJ.debugMode) IJ.log("Updater: " + ij_jar);
File file = new File(ij_jar);
if (!file.exists()) {
error("File not found: " + file.getPath());
return;
}
if (!file.canWrite()) {
String msg = "No write access: " + file.getPath();
if (IJ.isVista()) msg += Prefs.vistaHint;
error(msg);
return;
}
String[] list = openUrlAsList(IJ.URL + "/download/jars/list.txt");
int count = list.length + 2;
String[] versions = new String[count];
String[] urls = new String[count];
String uv = getUpgradeVersion();
if (uv == null) return;
versions[0] = "v" + uv;
urls[0] = IJ.URL + "/upgrade/ij.jar";
if (versions[0] == null) return;
for (int i = 1; i < count - 1; i++) {
String version = list[i - 1];
versions[i] = version.substring(0, version.length() - 1); // remove letter
urls[i] =
IJ.URL + "/download/jars/ij" + version.substring(1, 2) + version.substring(3, 6) + ".jar";
}
versions[count - 1] = "daily build";
urls[count - 1] = IJ.URL + "/ij.jar";
int choice = showDialog(versions);
if (choice == -1) return;
if (!versions[choice].startsWith("daily")
&& versions[choice].compareTo("v1.39") < 0
&& Menus.getCommands().get("ImageJ Updater") == null) {
String msg =
"This command is not available in versions of ImageJ prior\n"
+ "to 1.39 so you will need to install the plugin version at\n"
+ "<"
+ IJ.URL
+ "/plugins/imagej-updater.html>.";
if (!IJ.showMessageWithCancel("Update ImageJ", msg)) return;
}
byte[] jar = getJar(urls[choice]);
// file.renameTo(new File(file.getParent()+File.separator+"ij.bak"));
if (version().compareTo("1.37v") >= 0) Prefs.savePreferences();
// if (!renameJar(file)) return; // doesn't work on Vista
saveJar(file, jar);
if (choice < count - 1) // force macro Function Finder to download fresh list
new File(IJ.getDirectory("macros") + "functions.html").delete();
System.exit(0);
}
public void deinit(Appendable out, boolean force) throws Exception {
Settings settings = new Settings(platform.getConfigFile());
if (!force) {
Justif justify = new Justif(80, 40);
StringBuilder sb = new StringBuilder();
Formatter f = new Formatter(sb);
try {
String list = listFiles(platform.getGlobal());
if (list != null) {
f.format("In global default environment:%n");
f.format(list);
}
list = listFiles(platform.getLocal());
if (list != null) {
f.format("In local default environment:%n");
f.format(list);
}
if (settings.containsKey(JPM_CACHE_GLOBAL)) {
list = listFiles(IO.getFile(settings.get(JPM_CACHE_GLOBAL)));
if (list != null) {
f.format("In global configured environment:%n");
f.format(list);
}
}
if (settings.containsKey(JPM_CACHE_LOCAL)) {
list = listFiles(IO.getFile(settings.get(JPM_CACHE_LOCAL)));
if (list != null) {
f.format("In local configured environment:%n");
f.format(list);
}
}
list = listSupportFiles();
if (list != null) {
f.format("jpm support files:%n");
f.format(list);
}
f.format("%n%n");
f.format(
"All files listed above will be deleted if deinit is run with the force flag set"
+ " (\"jpm deinit -f\" or \"jpm deinit --force\"%n%n");
f.flush();
justify.wrap(sb);
out.append(sb.toString());
} finally {
f.close();
}
} else { // i.e. if(force)
int count = 0;
File[] caches = {platform.getGlobal(), platform.getLocal(), null, null};
if (settings.containsKey(JPM_CACHE_LOCAL)) {
caches[2] = IO.getFile(settings.get(JPM_CACHE_LOCAL));
}
if (settings.containsKey(JPM_CACHE_GLOBAL)) {
caches[3] = IO.getFile(settings.get(JPM_CACHE_GLOBAL));
}
ArrayList<File> toDelete = new ArrayList<File>();
for (File cache : caches) {
if (cache == null || !cache.exists()) {
continue;
}
listFiles(cache, toDelete);
if (toDelete.size() > count) {
count = toDelete.size();
if (!cache.canWrite()) {
reporter.error(PERMISSION_ERROR + " (" + cache + ")");
return;
}
toDelete.add(cache);
}
}
listSupportFiles(toDelete);
for (File f : toDelete) {
if (f.exists() && !f.canWrite()) {
reporter.error(PERMISSION_ERROR + " (" + f + ")");
}
}
if (reporter.getErrors().size() > 0) {
return;
}
for (File f : toDelete) {
if (f.exists()) {
IO.deleteWithException(f);
}
}
}
}
public boolean hasAccess() {
assert (binDir != null);
assert (homeDir != null);
return binDir.canWrite() && homeDir.canWrite();
}
public static boolean fileCanBeSaved(File file) {
return !fileExists(file) && file.canWrite();
}
/** Does install of JRE */
public static void install() {
// Hide the JNLP Clients installer window and show own
Config.getInstallService().hideStatusWindow();
showInstallerWindow();
// Make sure the destination exists.
String path = Config.getInstallService().getInstallPath();
if (Config.isWindowsInstall()) {
String defaultLocation = "C:\\Program Files\\Java\\j2re" + Config.getJavaVersion() + "\\";
File defaultDir = new File(defaultLocation);
if (!defaultDir.exists()) {
defaultDir.mkdirs();
}
if (defaultDir.exists() && defaultDir.canWrite()) {
path = defaultLocation; // use default if you can
}
}
File installDir = new File(path);
if (!installDir.exists()) {
installDir.mkdirs();
if (!installDir.exists()) {
// The installFailed string is only for debugging. No localization needed
installFailed("couldntCreateDirectory", null);
return;
}
}
// Show license if neccesary
enableStep(STEP_LICENSE);
if (!showLicensing()) {
// The installFailed string is only for debugging. No localization needed
installFailed("Licensing was not accepted", null);
}
;
// Make sure that the data JAR is downloaded
enableStep(STEP_DOWNLOAD);
if (!downloadInstallerComponent()) {
// The installFailed string is only for debugging. No localization needed
installFailed("Unable to download data component", null);
}
String nativeLibName = Config.getNativeLibName();
File installerFile = null;
try {
// Load native library into process if found
if (nativeLibName != null && !Config.isSolarisInstall()) {
System.loadLibrary(nativeLibName);
}
// Unpack installer
enableStep(STEP_UNPACK);
String installResource = Config.getInstallerResource();
Config.trace("Installer resource: " + installResource);
installerFile = unpackInstaller(installResource);
// To clean-up downloaded files
Config.trace("Unpacked installer to: " + installerFile);
if (installerFile == null) {
// The installFailed string is only for debugging. No localization needed
installFailed("Could not unpack installer components", null);
return;
}
enableStep(STEP_INSTALL);
setStepText(STEP_INSTALL, Config.getWindowStepWait(STEP_INSTALL));
boolean success = false;
if (Config.isSolarisInstall()) {
success = runSolarisInstaller(path, installerFile);
} else {
success = runWindowsInstaller(path, installerFile);
}
if (!success) {
// The installFailed string is only for debugging. No localization needed
installFailed("Could not run installer", null);
return;
}
} catch (UnsatisfiedLinkError ule) {
// The installFailed string is only for debugging. No localization needed
installFailed("Unable to load library: " + nativeLibName, null);
return;
} finally {
if (installerFile != null) {
installerFile.delete();
}
}
setStepText(STEP_INSTALL, Config.getWindowStep(STEP_INSTALL));
enableStep(STEP_DONE);
String execPath = path + Config.getJavaPath();
Config.trace(execPath);
/** Remove installer JAR from cache */
removeInstallerComponent();
// If we're running anything after 1.0.1 or not on Windows, just call
// finishedInstall. Otherwise, deny ExitVM permission so that we can
// return here and do a reboot. We have to do this because we need to
// call ExtensionInstallerService.finishedInstall(), which registers
// that our extension (the JRE) is installed. Unfortunately pre-1.2 it
// also does not understand that we are requesting a reboot, and calls
// System.exit(). So for pre 1.2 we want to deny the permission to
// exit the VM so we can return here and perform a reboot.
boolean ispre12 = false;
String version = Config.getJavaWSVersion();
// get first tuple
String v = version.substring(version.indexOf('-') + 1);
int i2 = v.indexOf('.');
int v1 = Integer.parseInt(v.substring(0, i2));
// get second tuple
v = v.substring(i2 + 1);
i2 = v.indexOf('.');
if (i2 == -1) i2 = v.indexOf('-');
if (i2 == -1) i2 = v.indexOf('[');
if (i2 == -1) i2 = v.length();
int v2 = Integer.parseInt(v.substring(0, i2));
// are we pre 1.2?
if (v1 < 1 || (v1 == 1 && v2 < 2)) ispre12 = true;
if (Config.isWindowsInstall() && ispre12 && Config.isHopper()) {
// deny ExitVM permission then call finishedInstall
ProtectionDomain pd = (new Object()).getClass().getProtectionDomain();
CodeSource cs = pd.getCodeSource();
AllPermissionExceptExitVM perm = new AllPermissionExceptExitVM();
PermissionCollection newpc = perm.newPermissionCollection();
newpc.add(perm);
// run finishedInstall within the new context which excluded
// just the ExitVM permission
ProtectionDomain newpd = new ProtectionDomain(cs, newpc);
AccessControlContext newacc = new AccessControlContext(new ProtectionDomain[] {newpd});
final String fExecPath = execPath;
try {
AccessController.doPrivileged(
new PrivilegedExceptionAction() {
public Object run() throws SecurityException {
finishedInstall(fExecPath);
return null;
}
},
newacc);
} catch (PrivilegedActionException pae) {
// swallow the exception because we want ExitVM to fail silent
} catch (SecurityException se) {
// swallow the exception because we want ExitVM to fail silent
}
} else {
// just call finished Install
finishedInstall(execPath);
}
if (Config.isWindowsInstall() && WindowsInstaller.IsRebootNecessary()) {
// reboot
if (!WindowsInstaller.askUserForReboot()) System.exit(0);
} else {
System.exit(0);
}
}