private Set<String> getGuysIdentifiers(SemanticQuery query) {
ImmutableSet.Builder<String> b = ImmutableSet.builder();
for (String bioentityIdentifier :
analyticsSearchService.searchBioentityIdentifiers(
query, SemanticQuery.create(), SPECIES_IN_GUYS_EXPERIMENT.getReferenceName())) {
if (guysIdentifiersPerEnsemblId.containsKey(bioentityIdentifier)) {
b.add(guysIdentifiersPerEnsemblId.get(bioentityIdentifier));
}
}
return b.build();
}
@RunWith(SpringJUnit4ClassRunner.class)
@ContextConfiguration({
"/applicationContext.xml",
"/solrContext.xml",
"/embeddedSolrServerContext.xml",
"/oracleContext.xml"
})
public class AnalyticsSearchServiceIT {
@Inject private SpeciesFactory speciesFactory;
@Inject private AnalyticsSearchService subject;
private SemanticQuery query = SemanticQuery.create("zinc finger");
private SemanticQuery condition = SemanticQuery.create("pish");
private Species species;
@Before
public void setUp() {
species = speciesFactory.create("oryza sativa");
}
@Test
public void fetchExperimentTypes1() {
ImmutableSet<String> result = subject.fetchExperimentTypes("ENSG00000006432");
assertThat(result.size(), greaterThan(0));
}
@Test
public void fetchExperimentTypesInAnyField() {
ImmutableSet<String> result = subject.fetchExperimentTypesInAnyField(query);
assertThat(result.size(), greaterThan(0));
}
@Test
public void fetchExperimentTypes2() {
ImmutableSet<String> result = subject.fetchExperimentTypes(query, species.getReferenceName());
assertThat(result.size(), greaterThan(0));
}
@Test
public void fetchExperimentTypes3() {
ImmutableSet<String> result =
subject.fetchExperimentTypes(query, condition, species.getReferenceName());
assertThat(result.size(), greaterThan(0));
}
@Test
public void searchMoreThanOneBioentityIdentifier() {
ImmutableSet<String> result =
subject.searchMoreThanOneBioentityIdentifier(query, condition, species.getReferenceName());
assertThat(result.size(), greaterThan(0));
}
@Test
public void searchBioentityIdentifiers() {
ImmutableSet<String> result =
subject.searchBioentityIdentifiers(query, condition, species.getReferenceName());
assertThat(result.size(), greaterThan(0));
}
@Test
public void getBioentityIdentifiersForSpecies() {
Collection<String> result =
subject.getBioentityIdentifiersForSpecies(species.getReferenceName());
assertThat(result.size(), greaterThan(100));
}
@Test
public void tissueExpressionAvailableFor() {
boolean result = subject.tissueExpressionAvailableFor(query);
assertThat(result, is(true));
}
}