/**
* @param group
* @throws org.apache.directory.fortress.core.CreateException
*/
Group create(Group group) throws CreateException {
LdapConnection ld = null;
String nodeDn = getDn(group.getName(), group.getContextId());
try {
LOG.debug("create group dn [{}]", nodeDn);
Entry myEntry = new DefaultEntry(nodeDn);
myEntry.add(SchemaConstants.OBJECT_CLASS_AT, GROUP_OBJ_CLASS);
myEntry.add(SchemaConstants.CN_AT, group.getName());
// protocol is required:
myEntry.add(GROUP_PROTOCOL_ATTR_IMPL, group.getProtocol());
// type is required:
myEntry.add(GlobalIds.TYPE, group.getType().toString());
loadAttrs(group.getMembers(), myEntry, SchemaConstants.MEMBER_AT);
loadProperties(group.getProperties(), myEntry, GROUP_PROPERTY_ATTR_IMPL, '=');
if (StringUtils.isNotEmpty(group.getDescription())) {
myEntry.add(SchemaConstants.DESCRIPTION_AT, group.getDescription());
}
ld = getAdminConnection();
add(ld, myEntry);
} catch (LdapException e) {
String error = "create group node dn [" + nodeDn + "] caught LDAPException=" + e.getMessage();
throw new CreateException(GlobalErrIds.GROUP_ADD_FAILED, error, e);
} finally {
closeAdminConnection(ld);
}
return group;
}
private void recordUnidentifiableModifiedResidues(List<ModifiedCompound> modComps) {
Set<StructureGroup> identifiedComps = new HashSet<StructureGroup>();
for (ModifiedCompound mc : modComps) {
identifiedComps.addAll(mc.getGroups(true));
}
// TODO: use the ModifiedAminoAcid after Andreas add that.
for (Group group : residues) {
if (group.getType().equals(GroupType.HETATM)) {
StructureGroup strucGroup = StructureUtil.getStructureGroup(group, true);
if (!identifiedComps.contains(strucGroup)) {
unidentifiableModifiedResidues.add(strucGroup);
}
}
}
}
