/** * @param group * @throws org.apache.directory.fortress.core.CreateException */ Group create(Group group) throws CreateException { LdapConnection ld = null; String nodeDn = getDn(group.getName(), group.getContextId()); try { LOG.debug("create group dn [{}]", nodeDn); Entry myEntry = new DefaultEntry(nodeDn); myEntry.add(SchemaConstants.OBJECT_CLASS_AT, GROUP_OBJ_CLASS); myEntry.add(SchemaConstants.CN_AT, group.getName()); // protocol is required: myEntry.add(GROUP_PROTOCOL_ATTR_IMPL, group.getProtocol()); // type is required: myEntry.add(GlobalIds.TYPE, group.getType().toString()); loadAttrs(group.getMembers(), myEntry, SchemaConstants.MEMBER_AT); loadProperties(group.getProperties(), myEntry, GROUP_PROPERTY_ATTR_IMPL, '='); if (StringUtils.isNotEmpty(group.getDescription())) { myEntry.add(SchemaConstants.DESCRIPTION_AT, group.getDescription()); } ld = getAdminConnection(); add(ld, myEntry); } catch (LdapException e) { String error = "create group node dn [" + nodeDn + "] caught LDAPException=" + e.getMessage(); throw new CreateException(GlobalErrIds.GROUP_ADD_FAILED, error, e); } finally { closeAdminConnection(ld); } return group; }
private void recordUnidentifiableModifiedResidues(List<ModifiedCompound> modComps) { Set<StructureGroup> identifiedComps = new HashSet<StructureGroup>(); for (ModifiedCompound mc : modComps) { identifiedComps.addAll(mc.getGroups(true)); } // TODO: use the ModifiedAminoAcid after Andreas add that. for (Group group : residues) { if (group.getType().equals(GroupType.HETATM)) { StructureGroup strucGroup = StructureUtil.getStructureGroup(group, true); if (!identifiedComps.contains(strucGroup)) { unidentifiableModifiedResidues.add(strucGroup); } } } }