Ejemplo n.º 1
0
  @Test
  public void testBruteForce() {
    /* This test creates a dataset where feature values are multiples of consecutive natural numbers
      The obtained values are compared to the theoretical mean and std dev
    */
    double tolerancePerc = 0.01; // 0.01% of correct value
    int nSamples = 5120;
    int x = 1, y = 2, z = 3;

    INDArray featureX = Nd4j.linspace(1, nSamples, nSamples).reshape(nSamples, 1).mul(x);
    INDArray featureY = featureX.mul(y);
    INDArray featureZ = featureX.mul(z);
    INDArray featureSet = Nd4j.concat(1, featureX, featureY, featureZ);
    INDArray labelSet = Nd4j.zeros(nSamples, 1);
    DataSet sampleDataSet = new DataSet(featureSet, labelSet);

    double meanNaturalNums = (nSamples + 1) / 2.0;
    INDArray theoreticalMean =
        Nd4j.create(new double[] {meanNaturalNums * x, meanNaturalNums * y, meanNaturalNums * z});
    double stdNaturalNums = Math.sqrt((nSamples * nSamples - 1) / 12.0);
    INDArray theoreticalStd =
        Nd4j.create(new double[] {stdNaturalNums * x, stdNaturalNums * y, stdNaturalNums * z});

    NormalizerStandardize myNormalizer = new NormalizerStandardize();
    myNormalizer.fit(sampleDataSet);

    INDArray meanDelta = Transforms.abs(theoreticalMean.sub(myNormalizer.getMean()));
    INDArray meanDeltaPerc = meanDelta.div(theoreticalMean).mul(100);
    double maxMeanDeltaPerc = meanDeltaPerc.max(1).getDouble(0, 0);
    assertTrue(maxMeanDeltaPerc < tolerancePerc);

    INDArray stdDelta = Transforms.abs(theoreticalMean.sub(myNormalizer.getMean()));
    INDArray stdDeltaPerc = stdDelta.div(theoreticalStd).mul(100);
    double maxStdDeltaPerc = stdDeltaPerc.max(1).getDouble(0, 0);
    assertTrue(maxStdDeltaPerc < tolerancePerc);

    // SAME TEST WITH THE ITERATOR
    int bSize = 10;
    tolerancePerc = 1; // 1% of correct value
    DataSetIterator sampleIter = new TestDataSetIterator(sampleDataSet, bSize);
    myNormalizer.fit(sampleIter);

    meanDelta = Transforms.abs(theoreticalMean.sub(myNormalizer.getMean()));
    meanDeltaPerc = meanDelta.div(theoreticalMean).mul(100);
    maxMeanDeltaPerc = meanDeltaPerc.max(1).getDouble(0, 0);
    assertTrue(maxMeanDeltaPerc < tolerancePerc);

    stdDelta = Transforms.abs(theoreticalMean.sub(myNormalizer.getMean()));
    stdDeltaPerc = stdDelta.div(theoreticalStd).mul(100);
    maxStdDeltaPerc = stdDeltaPerc.max(1).getDouble(0, 0);
    assertTrue(maxStdDeltaPerc < tolerancePerc);
  }
Ejemplo n.º 2
0
  @Test
  public void testUnderOverflow() {
    // This dataset will be basically constant with a small std deviation
    // And the constant is large. Checking if algorithm can handle
    double tolerancePerc = 1; // Within 1 %
    double toleranceAbs = 0.0005;
    int nSamples = 1000;
    int bSize = 10;
    int x = -1000000, y = 1000000;
    double z = 1000000;

    INDArray featureX = Nd4j.rand(nSamples, 1).mul(1).add(x);
    INDArray featureY = Nd4j.rand(nSamples, 1).mul(2).add(y);
    INDArray featureZ = Nd4j.rand(nSamples, 1).mul(3).add(z);
    INDArray featureSet = Nd4j.concat(1, featureX, featureY, featureZ);
    INDArray labelSet = Nd4j.zeros(nSamples, 1);
    DataSet sampleDataSet = new DataSet(featureSet, labelSet);
    DataSetIterator sampleIter = new TestDataSetIterator(sampleDataSet, bSize);

    INDArray theoreticalMean = Nd4j.create(new double[] {x, y, z});

    NormalizerStandardize myNormalizer = new NormalizerStandardize();
    myNormalizer.fit(sampleIter);

    INDArray meanDelta = Transforms.abs(theoreticalMean.sub(myNormalizer.getMean()));
    INDArray meanDeltaPerc = meanDelta.mul(100).div(theoreticalMean);
    assertTrue(meanDeltaPerc.max(1).getDouble(0, 0) < tolerancePerc);

    // this just has to not barf
    // myNormalizer.transform(sampleIter);
    myNormalizer.transform(sampleDataSet);
  }
Ejemplo n.º 3
0
  @Test
  public void testTransform() {
    /*Random dataset is generated such that
       AX + B where X is from a normal distribution with mean 0 and std 1
       The mean of above will be B and std A
       Obtained mean and std dev are compared to theoretical
       Transformed values should be the same as X with the same seed.
    */
    long randSeed = 7139183;

    int nFeatures = 2;
    int nSamples = 6400;
    int bsize = 8;
    int a = 2;
    int b = 10;
    INDArray sampleMean, sampleStd, sampleMeanDelta, sampleStdDelta, delta, deltaPerc;
    double maxDeltaPerc, sampleMeanSEM;

    genRandomDataSet normData = new genRandomDataSet(nSamples, nFeatures, a, b, randSeed);
    genRandomDataSet expectedData = new genRandomDataSet(nSamples, nFeatures, 1, 0, randSeed);
    genRandomDataSet beforeTransformData =
        new genRandomDataSet(nSamples, nFeatures, a, b, randSeed);

    NormalizerStandardize myNormalizer = new NormalizerStandardize();
    DataSetIterator normIterator = normData.getIter(bsize);
    DataSetIterator expectedIterator = expectedData.getIter(bsize);
    DataSetIterator beforeTransformIterator = beforeTransformData.getIter(bsize);

    myNormalizer.fit(normIterator);

    double tolerancePerc = 5.0; // within 5%
    sampleMean = myNormalizer.getMean();
    sampleMeanDelta = Transforms.abs(sampleMean.sub(normData.theoreticalMean));
    assertTrue(
        sampleMeanDelta.mul(100).div(normData.theoreticalMean).max(1).getDouble(0, 0)
            < tolerancePerc);
    // sanity check to see if it's within the theoretical standard error of mean
    sampleMeanSEM = sampleMeanDelta.div(normData.theoreticalSEM).max(1).getDouble(0, 0);
    assertTrue(sampleMeanSEM < 2.6); // 99% of the time it should be within this many SEMs

    tolerancePerc = 10.0; // within 10%
    sampleStd = myNormalizer.getStd();
    sampleStdDelta = Transforms.abs(sampleStd.sub(normData.theoreticalStd));
    assertTrue(
        sampleStdDelta.div(normData.theoreticalStd).max(1).mul(100).getDouble(0, 0)
            < tolerancePerc);

    normIterator.setPreProcessor(myNormalizer);
    while (normIterator.hasNext()) {
      INDArray before = beforeTransformIterator.next().getFeatures();
      INDArray after = normIterator.next().getFeatures();
      INDArray expected = expectedIterator.next().getFeatures();
      delta = Transforms.abs(after.sub(expected));
      deltaPerc = delta.div(before.sub(expected));
      deltaPerc.muli(100);
      maxDeltaPerc = deltaPerc.max(0, 1).getDouble(0, 0);
      // System.out.println("=== BEFORE ===");
      // System.out.println(before);
      // System.out.println("=== AFTER ===");
      // System.out.println(after);
      // System.out.println("=== SHOULD BE ===");
      // System.out.println(expected);
      assertTrue(maxDeltaPerc < tolerancePerc);
    }
  }