private String formatLogicalPackageMessage(LogicalPackage logicalPackage) {
IScriptFolder[] fragments = logicalPackage.getScriptFolders();
StringBuffer buf = new StringBuffer(logicalPackage.getElementName());
buf.append(ScriptElementLabels.CONCAT_STRING);
String message = ""; // $NON-NLS-1$
boolean firstTime = true;
for (int i = 0; i < fragments.length; i++) {
IScriptFolder fragment = fragments[i];
IModelElement element = fragment.getParent();
if (element instanceof IProjectFragment) {
IProjectFragment root = (IProjectFragment) element;
String label =
ScriptElementLabels.getDefault()
.getElementLabel(
root,
ScriptElementLabels.DEFAULT_QUALIFIED | ScriptElementLabels.ROOT_QUALIFIED);
if (firstTime) {
buf.append(label);
firstTime = false;
} else
message =
Messages.format(
ScriptBrowsingMessages.StatusBar_concat, new String[] {message, label});
}
}
buf.append(message);
return buf.toString();
}
private IHyperlink getTemplateLink(ViewPath viewPath, IRegion wordRegion) {
IScriptFolder folder =
SymfonyModelAccess.getDefault()
.findBundleFolder(viewPath.getBundle(), input.getScriptProject());
if (folder == null) {
Logger.debugMSG("Unable to resolve template link: " + viewPath);
return null;
}
String path = "Resources/views/";
if (viewPath.getController() != null) {
path += viewPath.getController() + "/";
}
path += viewPath.getTemplate();
ISourceModule module = folder.getSourceModule(path);
if (module != null) {
return new ModelElementHyperlink(wordRegion, module, new OpenAction(editor));
}
return null;
}
public Object getHierarchicalPackageParent(final IScriptFolder child) {
String name = child.getElementName();
IProjectFragment parent = (IProjectFragment) child.getParent();
int index = name.lastIndexOf(IScriptFolder.PACKAGE_DELIMITER);
if (index != -1) {
String realParentName = name.substring(0, index);
IScriptFolder element = parent.getScriptFolder(realParentName);
if (element != null && element.exists()) {
try {
if (fFoldPackages
&& ScriptExplorerContentProvider.isEmpty(element)
&& ScriptExplorerContentProvider.findSinglePackageChild(element, parent.getChildren())
!= null) {
return getHierarchicalPackageParent(element);
}
} catch (ModelException e) {
// ignore
}
return element;
} else if (element != null) { // bug 65240
IResource resource = element.getResource();
if (resource != null) {
return resource;
}
}
}
if (parent.getResource() instanceof IProject) {
return parent.getScriptProject();
}
return parent;
}
private String getNameDelta(IScriptFolder parent, IScriptFolder fragment) {
String prefix = parent.getElementName() + IScriptFolder.PACKAGE_DELIMITER;
String fullName = fragment.getElementName();
if (fullName.startsWith(prefix)) {
return fullName.substring(prefix.length());
}
return fullName;
}
private String getNameDelta(IFolder parent, IScriptFolder fragment) {
IPath prefix = parent.getFullPath();
IPath fullPath = fragment.getPath();
if (prefix.isPrefixOf(fullPath)) {
StringBuffer buf = new StringBuffer();
for (int i = prefix.segmentCount(); i < fullPath.segmentCount(); i++) {
if (buf.length() > 0) buf.append(IScriptFolder.PACKAGE_DELIMITER);
buf.append(fullPath.segment(i));
}
return buf.toString();
}
return fragment.getElementName();
}
private static boolean hasReadOnlyResourcesAndSubResources(IModelElement modelElement)
throws CoreException {
switch (modelElement.getElementType()) {
case IModelElement.SOURCE_MODULE:
IResource resource = ReorgUtils.getResource(modelElement);
return (resource != null && Resources.isReadOnly(resource));
case IModelElement.SCRIPT_FOLDER:
IResource packResource = ReorgUtils.getResource(modelElement);
if (packResource == null) return false;
IScriptFolder pack = (IScriptFolder) modelElement;
if (Resources.isReadOnly(packResource)) return true;
Object[] nonScript = pack.getForeignResources();
for (int i = 0; i < nonScript.length; i++) {
Object object = nonScript[i];
if (object instanceof IResource
&& hasReadOnlyResourcesAndSubResources((IResource) object)) return true;
}
return hasReadOnlyResourcesAndSubResources(pack.getChildren());
case IModelElement.PROJECT_FRAGMENT:
IProjectFragment root = (IProjectFragment) modelElement;
if (root.isArchive()) return false;
IResource pfrResource = ReorgUtils.getResource(modelElement);
if (pfrResource == null) return false;
if (Resources.isReadOnly(pfrResource)) return true;
Object[] nonScript1 = root.getForeignResources();
for (int i = 0; i < nonScript1.length; i++) {
Object object = nonScript1[i];
if (object instanceof IResource
&& hasReadOnlyResourcesAndSubResources((IResource) object)) return true;
}
return hasReadOnlyResourcesAndSubResources(root.getChildren());
case IModelElement.FIELD:
// case IModelElement.IMPORT_CONTAINER:
// case IModelElement.IMPORT_DECLARATION:
// case IModelElement.INITIALIZER:
case IModelElement.METHOD:
// case IModelElement.PACKAGE_DECLARATION:
case IModelElement.TYPE:
return false;
default:
Assert.isTrue(false); // not handled here
return false;
}
}
/** Adds all of the openables defined within this package fragment to the list. */
private void injectAllOpenablesForPackageFragment(IScriptFolder packFrag, ArrayList openables) {
try {
IProjectFragment root = (IProjectFragment) packFrag.getParent();
int kind = root.getKind();
if (kind != 0) {
boolean isSourcePackageFragment = (kind == IProjectFragment.K_SOURCE);
if (isSourcePackageFragment) {
ISourceModule[] cus = packFrag.getSourceModules();
for (int i = 0; i < cus.length; i++) {
openables.add(cus[i]);
}
}
}
} catch (ModelException e) {
// ignore
}
}
/**
* Returns the hierarchical packages inside a given folder.
*
* @param folder The parent folder
* @param result Collection where the resulting elements are added
* @throws CoreException thrown when elements could not be accessed
*/
private void getHierarchicalPackagesInFolder(
final IFolder folder, final Collection<Object> result) throws CoreException {
IResource[] resources = folder.members();
for (int i = 0; i < resources.length; i++) {
IResource resource = resources[i];
if (resource instanceof IFolder) {
IFolder curr = (IFolder) resource;
IModelElement element = DLTKCore.create(curr);
if (element instanceof IScriptFolder) {
if (fFoldPackages) {
IScriptFolder fragment = (IScriptFolder) element;
IProjectFragment root = (IProjectFragment) fragment.getParent();
element = ScriptExplorerContentProvider.getFolded(root.getChildren(), fragment);
}
result.add(element);
}
}
}
}
@Override
public String resolve(IScriptFolder container) {
if (container == null) {
Logger.log(Logger.WARNING, "Unable to resolve namespace, no container available");
return null;
}
// Try composer first - Symfony 2.1
try {
IPath path = ModelAccess.getInstance().resolve(container.getResource());
if (path != null) {
return path.toString().replace("/", "\\");
}
} catch (Exception e) {
Logger.logException(e);
}
// fallback to Symfony 2.0
return SymfonyModelAccess.getDefault()
.findNameSpace(container.getScriptProject(), container.getPath());
}
/**
* Returns the hierarchical packages inside a given fragment or root.
*
* @param parent The parent package fragment root
* @param fragment The package to get the children for or 'null' to get the children of the root.
* @param result Collection where the resulting elements are added
* @throws JavaModelException
*/
private void getHierarchicalPackageChildren(
final IProjectFragment parent, final IScriptFolder fragment, final Collection<Object> result)
throws ModelException {
IModelElement[] children = parent.getChildren();
if (fragment == null || fragment.isRootFolder()) {
List<IModelElement> newElements = new ArrayList<IModelElement>();
for (int i = 0; i < children.length; ++i) {
if (children[i] instanceof IScriptFolder) {
IScriptFolder scriptFolder = (IScriptFolder) children[i];
if (scriptFolder.isRootFolder()) {
IModelElement[] members = scriptFolder.getChildren();
for (int j = 0; j < members.length; ++j) {
newElements.add(members[j]);
}
continue;
}
}
newElements.add(children[i]);
}
children = newElements.toArray(new IModelElement[newElements.size()]);
}
String prefix =
fragment != null
? fragment.getElementName() + IScriptFolder.PACKAGE_DELIMETER_STR
: ""; //$NON-NLS-1$
int prefixLen = prefix.length();
for (int i = 0; i < children.length; i++) {
if (children[i] instanceof IScriptFolder) {
IScriptFolder curr = (IScriptFolder) children[i];
String name = curr.getElementName();
if (name.startsWith(prefix)
&& name.length() > prefixLen
&& name.indexOf(IScriptFolder.PACKAGE_DELIMITER, prefixLen) == -1) {
if (fFoldPackages) {
curr = ScriptExplorerContentProvider.getFolded(children, curr);
}
result.add(curr);
} /*
* else if (fragment == null && curr.isRootFolder()) {
* result.add(curr); }
*/
} else {
result.add(children[i]);
}
}
}
/*
* (non-Javadoc)
*
* @see
* org.eclipse.jdt.ui.StandardJavaElementContentProvider#getPackageContent
* (org.eclipse.jdt.core.IPackageFragment)
*/
protected Object[] getScriptFolderContent(final IScriptFolder fragment) throws ModelException {
if (fIsFlatLayout) {
return super.getScriptFolderContent(fragment);
}
// hierarchical package mode
ArrayList<Object> result = new ArrayList<Object>();
getHierarchicalPackageChildren((IProjectFragment) fragment.getParent(), fragment, result);
Object[] nonPackages = super.getScriptFolderContent(fragment);
if (result.isEmpty()) {
return nonPackages;
}
for (int i = 0; i < nonPackages.length; i++) {
result.add(nonPackages[i]);
}
return result.toArray();
}
private static IScriptFolder findSinglePackageChild(
final IScriptFolder fragment, final IModelElement[] children) {
String prefix = fragment.getElementName() + IScriptFolder.PACKAGE_DELIMITER;
int prefixLen = prefix.length();
IScriptFolder found = null;
for (int i = 0; i < children.length; i++) {
IModelElement element = children[i];
String name = element.getElementName();
if (name.startsWith(prefix)
&& name.length() > prefixLen
&& name.indexOf(IScriptFolder.PACKAGE_DELIMITER, prefixLen) == -1) {
if (found == null) {
found = (IScriptFolder) element;
} else {
return null;
}
}
}
return found;
}
@Override
public Object execute(ExecutionEvent event) {
// Plugin.isManuallyStarted = true;
System.out.println("ASIDECodeAnnotateHandler.java is ran ---first line");
targetPart = HandlerUtil.getActivePart(event);
IWorkbenchPartSite site = targetPart.getSite();
ISelectionProvider selectionProvider = site.getSelectionProvider();
if (selectionProvider == null) {
return null;
}
ISelection selection = selectionProvider.getSelection();
if (selection == null) {
System.out.println("selectProject = ");
return null;
}
IResource iRes = extractSelection(selection);
if (iRes == null) {
System.out.println("test == null");
return null;
}
selectProject = iRes.getProject();
if (selectProject == null) {
System.out.println("selectProject == null");
return null;
}
System.out.println("selectProject = " + selectProject.getName());
// the following is temporarily added here
pathCollector = ModelRegistry.getPathCollectorForProject(selectProject);
if (pathCollector == null) {
pathCollector = new PathCollector(selectProject);
}
paths = pathCollector.getAllPaths();
if (paths == null) paths = Collections.synchronizedList(new ArrayList<Path>());
System.out.println(
"ASIDECodeAnnotateHandler.java is ran -- start iterating files of the project");
IScriptProject scriptProject = DLTKCore.create(selectProject);
if (scriptProject == null) {
System.out.println("scirpt project == null");
return null;
}
int count = 1;
// gather statistics
// GatherStatistics.NumOfWarningsInEachFile();
// while tablename = ...
Utils.removeAllQuestionMarkers(iRes);
Plugin.projectResource = iRes;
Iterator ite = Plugin.sensitive_DB_Tables.iterator();
String currentSensitiveTableName = null;
// commented out Nov. 27
/*while(ite.hasNext()){
currentSensitiveTableName = (String) ite.next();
Plugin.CurrentSensitiveDBTable = currentSensitiveTableName;
System.out.println("Current Table is=" + Plugin.CurrentSensitiveDBTable);*/
String currentTableName;
while (!Plugin.sensitive_DB_Tables_AlphRanked
.isEmpty()) { // collect the warnings that comes from one table, one throughout iteration
// for each table, and put the results into the
currentTableName = Plugin.sensitive_DB_Tables_AlphRanked.first();
count = 1;
Plugin.allMarkerRecords.clear();
while (Plugin.sensitiveOperationsForCurrentIteration != null
&& Plugin.sensitiveOperationsForCurrentIteration.size() != 0) {
count++;
System.out.println("-----------------begin round " + count);
System.out.println(
"Plugin.sensitiveOperationsForCurrentIteration size =!!!"
+ Plugin.sensitiveOperationsForCurrentIteration.size());
IScriptFolder[] folders = null;
try {
folders = scriptProject.getScriptFolders();
} catch (ModelException e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
System.out.println("number of folders ==" + folders.length);
/*String pattern = "Exec";
process(selectProject, pattern);*/
////////////////
Plugin.sensitiveOperationsForAnotherIteration.clear();
Plugin.sensitiveOperationsForAnotherIteration = new HashSet();
// System.out.println("at the begining point: size of current " +
// Plugin.sensitiveOperationsForCurrentIteration.size());
int numOfFiles = 0;
for (IScriptFolder folder : folders) {
String folderName = folder.getElementName();
if (!Constants.PHPLibraryFolders.contains(folderName)) {
ISourceModule[] sourceModules = null;
try {
sourceModules = folder.getSourceModules();
} catch (ModelException e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
numOfFiles += sourceModules.length;
}
}
/* for(int i = 0; i < 20; i++)
System.out.println("files num = " + numOfFiles);*/
System.out.println("sum of folders =" + folders.length);
int currentFolderNum = 1;
for (IScriptFolder folder : folders) {
System.out.println("folder scanning = " + currentFolderNum + "/" + folders.length);
String folderName = folder.getElementName();
System.out.println("folder name = " + folderName);
if (!Constants.PHPLibraryFolders.contains(folderName)) {
ISourceModule[] sourceModules = null;
try {
sourceModules = folder.getSourceModules();
} catch (ModelException e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
for (ISourceModule tmpSourceModule : sourceModules) {
System.out.println("scanning " + tmpSourceModule.getElementName());
// if it is not the first time to run CodeAnnotate on this project, then disable the
// scan function,
// we have already pop the marker records from the file and displayed in Eclipse
// already.
if (false) {
} // temporarily testing
/* if(Plugin.FIRST_TIME_RUN == false){
//simply display the markers based on the marker records in the file
String fileDir = tmpSourceModule.getResource().getFullPath().toString();
System.out.println("all markers size = " + Plugin.allMarkerRecords.size());
HashSet<MarkerRecord> markerRecordsInSingleFile = Utils.getMarkerRecordsForSingleFile(Plugin.allMarkerRecords, fileDir);
Utils.createMarkersForSingleFile(markerRecordsInSingleFile, tmpSourceModule);
HashSet<AnnotationRecord> annotationRecordsInSingleFile = Utils.getAnnotationRecordsForSingleFile(Plugin.allAnnotationRecords, fileDir);
Utils.createAnnotationsForSingleFile(annotationRecordsInSingleFile, tmpSourceModule);
System.out.println("finished creating markers for fileDir = " + fileDir + ", markerRecordsInSingleFile size = " + markerRecordsInSingleFile.size());
}*/
else { // start scanning the files for sensitive operations
// System.out.println("isourcemodule being built = " +
// tmpSourceModule.getElementName().toLowerCase());
// System.out.println("full path of the source module is ---" +
// tmpSourceModule.getResource().getFullPath().toString());
SensitiveOperationVisitor visitor =
new SensitiveOperationVisitor(
tmpSourceModule,
Plugin.sensitiveOperationsForCurrentIteration,
Plugin.sensitiveOperationsForAnotherIteration,
Plugin.sensitiveOperations);
Program root = null;
try {
root = Utils.getCompilationUnit(tmpSourceModule);
} catch (Exception e) {
// TODO Auto-generated catch block
System.err.println("root = util.getcompilationUnit() throws exception!");
e.printStackTrace();
}
// System.out.println("begin of traverseTopDown");
if (root == null) {
System.err.println(
"tmpSourceModule name = "
+ tmpSourceModule.getElementName()
+ " in "
+ tmpSourceModule.getPath().toString());
System.err.println("root == null");
// return null;
}
root.traverseTopDown(visitor);
Plugin.sensitiveOperations = visitor.getSensitiveOperations();
Plugin.sensitiveOperationsForAnotherIteration =
visitor.getSensitiveOperationsForAnotherIteration();
}
}
}
currentFolderNum++;
}
Plugin.sensitiveOperationsForCurrentIteration.clear();
Plugin.sensitiveOperationsForCurrentIteration = new HashSet();
// System.out.println("Plugin.sensitiveOperationsForAnotherIteration size after iteration ="
// + Plugin.sensitiveOperationsForAnotherIteration.size());
Plugin.sensitiveOperationsForCurrentIteration =
(HashSet<SensitiveMethod>) Plugin.sensitiveOperationsForAnotherIteration.clone();
// System.out.println("after assignment, Plugin.sensitiveOperationsForCurrentIteratio size =
// " + Plugin.sensitiveOperationsForCurrentIteration.size());
/*String newRuleFileName = "newRulesForIteration" + count + "th.txt";
InRunPluginDataSave.writeNewSensitiveRulesIntoFile(newRuleFileName, Plugin.sensitiveOperationsForCurrentIteration);
String mappingFileName = "numOfWarningsInEachFileInIteration" + (count-1) + "th.txt";;
InRunPluginDataSave.writeMappingBetweenWarningsAndFiles(mappingFileName, Plugin.numberOfWarningsInEachFile);
if(count == 2){
String newTableNamesFileName = "tableNamesEncounteredInIteration" + (count-1) + "th.txt";
InRunPluginDataSave.writeTableNamesIntoFile(newTableNamesFileName, Plugin.allTableNames);
String mappingFileName2 = "numOfWarningsRelatedToEachTableForIteration" + (count-1) + "th.txt";
InRunPluginDataSave.writeMappingBetweenWarningsAndFiles(mappingFileName2, Plugin.numberOfWarningsRelatedToEachTable);
}*/
PostRunPluginConfig.writeMarkerRecordIntoFile(
Plugin.allMarkerRecords, count, currentTableName);
}
//// newly added
// remove the first table name in the treeset so that we focus on the next table in the next
// iteration.
Plugin.sensitive_DB_Tables_AlphRanked.pollFirst();
Plugin.sensitiveOperationsForCurrentIteration = RulesUtils.getSensitiveOperations();
}
// commented out Nov. 27
/*GatherStatistics.writeMarkersForEachTable(Plugin.allMarkerRecords, Plugin.CurrentSensitiveDBTable);
Plugin.allMarkerRecords.clear();
Plugin.allMarkerRecords = new HashSet();
count = 1;
Plugin.sensitiveOperationsForCurrentIteration.clear();
Plugin.sensitiveOperationsForCurrentIteration = new HashSet();
Plugin.sensitiveOperationsForCurrentIteration = (HashSet<SensitiveMethod>) Plugin.sensitiveOperationsForCurrentIteration_backup.clone();
Plugin.sensitiveOperations.clear();
Plugin.sensitiveOperations = new HashSet();
Plugin.sensitiveOperations = (HashSet<SensitiveMethod>)Plugin.sensitiveOperations_backup.clone();
}*/
// above is temporarily added.
// below are temporarily added for the analysis use
// GatherStatistics.filesWithoutRequiredAccessControls(Plugin.numberOfWarningsInEachFile,
// Plugin.numberOfAccessControlsInEachFile);
/*
* Use a Job to attach a {@link CodeAnnotateDocumentEditListener} to
* each and every IDocument that is related to a ICompilationUnit in the
* selected project
*/
/*
* Job job = new MountListenerJob("Mount listener to Java file",
* JavaCore.create(selectProject)); job.setPriority(Job.INTERACTIVE);
* job.schedule();
*/
/* Delegates all heavy lifting to {@link PathFinder} */
/*Job heavy_job = new Job("Finding paths in Project: "
+ selectProject.getName()) {
@Override
protected IStatus run(final IProgressMonitor monitor) {
try {
Plugin.getDefault().getWorkbench().getDisplay()
.asyncExec(new Runnable() {
@Override
public void run() {
// PathFinder.getInstance(selectProject).run(monitor);
}
});
} finally {
monitor.done();
}
return Status.OK_STATUS;
}
};
heavy_job.setPriority(Job.LONG);
heavy_job.schedule();
*/
System.out.println("finished scanning, marker records saved");
// PostRunPluginConfig.config(Plugin.allMarkerRecords, Plugin.allAnnotationRecords);
// PostRunPluginConfig.writeMarkerRecordIntoFile(Plugin.allMarkerRecords, count);
// GatherStatistics.readWarningStatistics(Plugin.sensitive_DB_Tables_AlphRanked,
// "Update_Level5.txt");
return null;
}
private static boolean isEmpty(final IScriptFolder fragment) throws ModelException {
return !fragment.containsScriptResources() && fragment.getForeignResources().length == 0;
}
