/**
* Include parent study metadata which is in the same ODM XML file.
*
* @return
*/
private void collectIncludeFromParentInSameFile() {
MetaDataVersionIncludeBean ib = this.odmStudy.getMetaDataVersion().getInclude();
String metaOid = this.getParentMetaDataVersionOid();
String pstudyOID = this.parentStudy.getOid();
if (pstudyOID == null || pstudyOID.length() <= 0) {
pstudyOID = "" + this.parentStudy.getId();
}
ib.setMetaDataVersionOID(metaOid);
ib.setStudyOID(pstudyOID);
}
private void collectMetaDataVersion() {
ArrayList<StudyEventDefinitionBean> sedBeansInStudy =
(ArrayList<StudyEventDefinitionBean>) studyBase.getSedBeansInStudy();
if (sedBeansInStudy == null || sedBeansInStudy.size() < 1) {
logger.info("null, because there is no study event definition in this study.");
return;
}
StudyBean study = studyBase.getStudy();
MetaDataVersionBean metadata = this.odmStudy.getMetaDataVersion();
StudyParameterValueDAO spvdao = new StudyParameterValueDAO(this.ds);
int parentId = study.getParentStudyId() > 0 ? study.getParentStudyId() : study.getId();
StudyParameterValueBean spv = spvdao.findByHandleAndStudy(parentId, "discrepancyManagement");
metadata.setSoftHard(spv.getValue().equalsIgnoreCase("true") ? "Hard" : "Soft");
OdmExtractDAO oedao = new OdmExtractDAO(this.ds);
int studyId = study.getId();
int parentStudyId = study.getParentStudyId() > 0 ? study.getParentStudyId() : studyId;
if (this.getCategory() == 1 && study.isSite(study.getParentStudyId())) {
// populate MetaDataVersion attributes
if (dataset != null) {
metadata.setOid(dataset.getODMMetaDataVersionOid() + "-" + study.getOid());
metadata.setName(dataset.getODMMetaDataVersionName() + "-" + study.getOid());
this.setParentMetaDataVersionOid(dataset.getODMMetaDataVersionOid());
}
if (metadata.getOid() == null || metadata.getOid().length() <= 0) {
metadata.setOid("v1.0.0" + "-" + study.getOid());
this.setParentMetaDataVersionOid("v1.0.0");
}
if (metadata.getName() == null || metadata.getName().length() <= 0) {
metadata.setName("MetaDataVersion_v1.0.0" + "-" + study.getOid());
}
// populate Include
this.collectIncludeFromParentInSameFile();
// populate protocol
oedao.getUpdatedSiteMetadata(parentStudyId, studyId, metadata, this.odmBean.getODMVersion());
} else {
if (dataset != null) {
metadata.setOid(dataset.getODMMetaDataVersionOid());
metadata.setName(dataset.getODMMetaDataVersionName());
}
if (metadata.getOid() == null || metadata.getOid().length() <= 0) {
metadata.setOid("v1.0.0");
}
if (metadata.getName() == null || metadata.getName().length() <= 0) {
metadata.setName("MetaDataVersion_v1.0.0");
}
// populate Include
String psOid = new String();
String pmOid = new String();
if (dataset != null) {
psOid = dataset.getODMPriorStudyOid();
pmOid = dataset.getODMPriorMetaDataVersionOid();
}
if (pmOid != null && pmOid.length() > 0) {
MetaDataVersionIncludeBean ib = metadata.getInclude();
ib.setMetaDataVersionOID(pmOid);
if (psOid != null && psOid.length() > 0) {
ib.setStudyOID(psOid);
} else {
ib.setStudyOID(study.getOid());
}
}
// populate protocol
// Set<Integer> nullCodeSet = oedao.getMetadata(parentStudyId,
// studyId,
// metadata, this.getODMBean().getODMVersion());
// studyBase.setNullClSet(nullCodeSet);
oedao.getMetadata(parentStudyId, studyId, metadata, this.odmBean.getODMVersion());
}
}