Ejemplo n.º 1
0
 /**
  * Include parent study metadata which is in the same ODM XML file.
  *
  * @return
  */
 private void collectIncludeFromParentInSameFile() {
   MetaDataVersionIncludeBean ib = this.odmStudy.getMetaDataVersion().getInclude();
   String metaOid = this.getParentMetaDataVersionOid();
   String pstudyOID = this.parentStudy.getOid();
   if (pstudyOID == null || pstudyOID.length() <= 0) {
     pstudyOID = "" + this.parentStudy.getId();
   }
   ib.setMetaDataVersionOID(metaOid);
   ib.setStudyOID(pstudyOID);
 }
Ejemplo n.º 2
0
  private void collectMetaDataVersion() {
    ArrayList<StudyEventDefinitionBean> sedBeansInStudy =
        (ArrayList<StudyEventDefinitionBean>) studyBase.getSedBeansInStudy();
    if (sedBeansInStudy == null || sedBeansInStudy.size() < 1) {
      logger.info("null, because there is no study event definition in this study.");
      return;
    }

    StudyBean study = studyBase.getStudy();
    MetaDataVersionBean metadata = this.odmStudy.getMetaDataVersion();

    StudyParameterValueDAO spvdao = new StudyParameterValueDAO(this.ds);
    int parentId = study.getParentStudyId() > 0 ? study.getParentStudyId() : study.getId();
    StudyParameterValueBean spv = spvdao.findByHandleAndStudy(parentId, "discrepancyManagement");
    metadata.setSoftHard(spv.getValue().equalsIgnoreCase("true") ? "Hard" : "Soft");

    OdmExtractDAO oedao = new OdmExtractDAO(this.ds);
    int studyId = study.getId();
    int parentStudyId = study.getParentStudyId() > 0 ? study.getParentStudyId() : studyId;
    if (this.getCategory() == 1 && study.isSite(study.getParentStudyId())) {
      // populate MetaDataVersion attributes
      if (dataset != null) {
        metadata.setOid(dataset.getODMMetaDataVersionOid() + "-" + study.getOid());
        metadata.setName(dataset.getODMMetaDataVersionName() + "-" + study.getOid());
        this.setParentMetaDataVersionOid(dataset.getODMMetaDataVersionOid());
      }
      if (metadata.getOid() == null || metadata.getOid().length() <= 0) {
        metadata.setOid("v1.0.0" + "-" + study.getOid());
        this.setParentMetaDataVersionOid("v1.0.0");
      }
      if (metadata.getName() == null || metadata.getName().length() <= 0) {
        metadata.setName("MetaDataVersion_v1.0.0" + "-" + study.getOid());
      }

      // populate Include
      this.collectIncludeFromParentInSameFile();

      // populate protocol
      oedao.getUpdatedSiteMetadata(parentStudyId, studyId, metadata, this.odmBean.getODMVersion());
    } else {
      if (dataset != null) {
        metadata.setOid(dataset.getODMMetaDataVersionOid());
        metadata.setName(dataset.getODMMetaDataVersionName());
      }
      if (metadata.getOid() == null || metadata.getOid().length() <= 0) {
        metadata.setOid("v1.0.0");
      }
      if (metadata.getName() == null || metadata.getName().length() <= 0) {
        metadata.setName("MetaDataVersion_v1.0.0");
      }

      // populate Include
      String psOid = new String();
      String pmOid = new String();
      if (dataset != null) {
        psOid = dataset.getODMPriorStudyOid();
        pmOid = dataset.getODMPriorMetaDataVersionOid();
      }
      if (pmOid != null && pmOid.length() > 0) {
        MetaDataVersionIncludeBean ib = metadata.getInclude();
        ib.setMetaDataVersionOID(pmOid);
        if (psOid != null && psOid.length() > 0) {
          ib.setStudyOID(psOid);
        } else {
          ib.setStudyOID(study.getOid());
        }
      }

      // populate protocol
      // Set<Integer> nullCodeSet = oedao.getMetadata(parentStudyId,
      // studyId,
      // metadata, this.getODMBean().getODMVersion());
      // studyBase.setNullClSet(nullCodeSet);
      oedao.getMetadata(parentStudyId, studyId, metadata, this.odmBean.getODMVersion());
    }
  }