@Test
public void testAsGenotypeLocations() {
Genome genome = new Genome("profileId", "ACGT__");
Genotype genotype = genome.asGenotype("rs41362547", "rs28358280", "rs3915952");
assertEquals(genome.getProfileId(), genotype.getProfileId());
assertEquals("AC", genotype.getValues().get("rs41362547"));
assertEquals("GT", genotype.getValues().get("rs28358280"));
assertEquals("__", genotype.getValues().get("rs3915952"));
}
@Test
public void testAsGenotype() {
StringBuilder sb = new StringBuilder();
for (String location : Locations.locations()) {
sb.append("AC");
}
Genome genome = new Genome("profileId", sb.toString());
Genotype genotype = genome.asGenotype();
assertEquals(genome.getProfileId(), genotype.getProfileId());
for (String location : Locations.locations()) {
assertEquals("AC", genotype.getValues().get(location));
}
}
