Beispiel #1
0
 private String getMoState(int modelIndex) {
   strID = getId(modelIndex);
   if (!getSettings(strID)) return "";
   SB s = new SB();
   int modelCount = vwr.getModelCount();
   if (modelCount > 1) appendCmd(s, "frame " + vwr.getModelNumberDotted(modelIndex));
   if (moCutoff != null)
     appendCmd(s, "mo cutoff " + (sg.getIsPositiveOnly() ? "+" : "") + moCutoff);
   if (moScale != null) appendCmd(s, "mo scale " + moScale);
   if (moMonteCarloCount != null)
     appendCmd(s, "mo points " + moMonteCarloCount + " " + moRandomSeed);
   if (moResolution != null) appendCmd(s, "mo resolution " + moResolution);
   if (moPlane != null)
     appendCmd(
         s, "mo plane {" + moPlane.x + " " + moPlane.y + " " + moPlane.z + " " + moPlane.w + "}");
   if (moTitleFormat != null) appendCmd(s, "mo titleFormat " + PT.esc(moTitleFormat));
   // the following is a correct object==object test
   if (moColorNeg != null)
     appendCmd(
         s,
         "mo color "
             + Escape.escapeColor(moColorNeg.intValue())
             + (moColorNeg.equals(moColorPos)
                 ? ""
                 : " " + Escape.escapeColor(moColorPos.intValue())));
   if (moSlab != null) {
     if (thisMesh.slabOptions != null) appendCmd(s, thisMesh.slabOptions.toString());
     if (thisMesh.jvxlData.slabValue != Integer.MIN_VALUE)
       appendCmd(s, "mo slab " + thisMesh.jvxlData.slabValue);
   }
   if (moLinearCombination == null) {
     appendCmd(s, "mo " + (moSquareData == Boolean.TRUE ? "squared " : "") + moNumber);
   } else {
     appendCmd(
         s,
         "mo "
             + QS.getMOString(moLinearCombination)
             + (moSquareLinear == Boolean.TRUE ? " squared" : ""));
   }
   if (moTranslucency != null) appendCmd(s, "mo translucent " + moTranslucentLevel);
   appendCmd(s, ((IsosurfaceMesh) thisModel.get("mesh")).getState("mo"));
   return s.toString();
 }
 protected void jvxlDecodeContourData(JvxlData jvxlData, String data) throws Exception {
   List<List<Object>> vs = new List<List<Object>>();
   SB values = new SB();
   SB colors = new SB();
   int pt = -1;
   jvxlData.vContours = null;
   if (data == null) return;
   while ((pt = data.indexOf("<jvxlContour", pt + 1)) >= 0) {
     List<Object> v = new List<Object>();
     String s = xr.getXmlData("jvxlContour", data.substring(pt), true, false);
     float value = parseFloatStr(XmlReader.getXmlAttrib(s, "value"));
     values.append(" ").appendF(value);
     int color = getColor(XmlReader.getXmlAttrib(s, "color"));
     short colix = C.getColix(color);
     colors.append(" ").append(Escape.escapeColor(color));
     String fData = JvxlCoder.jvxlDecompressString(XmlReader.getXmlAttrib(s, "data"));
     BS bs = JvxlCoder.jvxlDecodeBitSet(xr.getXmlData("jvxlContour", s, false, false));
     int n = bs.length();
     IsosurfaceMesh.setContourVector(v, n, bs, value, colix, color, SB.newS(fData));
     vs.addLast(v);
   }
   int n = vs.size();
   if (n > 0) {
     jvxlData.vContours = AU.createArrayOfArrayList(n);
     // 3D contour values and colors
     jvxlData.contourColixes = params.contourColixes = new short[n];
     jvxlData.contourValues = params.contoursDiscrete = new float[n];
     for (int i = 0; i < n; i++) {
       jvxlData.vContours[i] = vs.get(i);
       jvxlData.contourValues[i] = ((Float) jvxlData.vContours[i].get(2)).floatValue();
       jvxlData.contourColixes[i] = ((short[]) jvxlData.vContours[i].get(3))[0];
     }
     jvxlData.contourColors = C.getHexCodes(jvxlData.contourColixes);
     Logger.info("JVXL read: " + n + " discrete contours");
     Logger.info("JVXL read: contour values: " + values);
     Logger.info("JVXL read: contour colors: " + colors);
   }
 }