A Java applet that uses JMol and algorithms in paper "Inter Nucleotide Contact Annotator in RNA (INCAR): A new approach to detect and analyze" to visualize and analyze RNA molecules. http://web2py.iiit.ac.in/research_centres/publications/view_publication/inproceedings/932
Run install_ubuntu for installing correct Java Version
Then to open the app Go to dist/
From Terminal: java -jar INCAR.jar
OR Double Click for GUI