/**
* Working ... This function is never used. It doesn't modify any parameters or data members and
* returns void.
*
* @param image DOCUMENT ME!
* @param doColor DOCUMENT ME!
*/
public void calculatePrincipleAxis(ModelImage image, boolean doColor) {
int x, y, z;
int n = 0;
Matrix3f mat2 = new Matrix3f(); // Row,Col
Matrix3f meanProduct = new Matrix3f();
Vector3f mean = new Vector3f(); // Column vector
double voxVal = 0;
double total = 0;
double tot = 0;
// Moments first and second order
double mX = 0, mY = 0, mZ = 0, mXX = 0, mXY = 0, mXZ = 0, mYY = 0, mYZ = 0, mZZ = 0;
float min = (float) image.getMin();
int xEnd = image.getExtents()[0];
int yEnd = image.getExtents()[1];
int zEnd = image.getExtents()[2];
int nLim = (int) Math.sqrt((double) xEnd * yEnd * zEnd);
if (nLim < 1000) {
nLim = 1000;
}
for (z = 0; z < zEnd; z++) {
for (y = 0; y < yEnd; y++) {
for (x = 0; x < xEnd; x++) {
if (doColor) {
voxVal =
(double)
(image.getFloatC(x, y, z, 1)
+ image.getFloatC(x, y, z, 2)
+ image.getFloatC(x, y, z, 3));
} else {
voxVal = (double) (image.getFloat(x, y, z) - min);
}
mX += voxVal * x;
mY += voxVal * y;
mZ += voxVal * z;
mXX += voxVal * x * x;
mXY += voxVal * x * y;
mXZ += voxVal * x * z;
mYY += voxVal * y * y;
mYZ += voxVal * y * z;
mZZ += voxVal * z * z;
tot += voxVal;
n++;
if (n > nLim) { // Lets not over run the buffers during summation
n = 0;
total += tot;
mat2.M00 = (float) (mat2.M00 + mXX);
mat2.M01 = (float) (mat2.M01 + mXY);
mat2.M02 = (float) (mat2.M02 + mXZ);
mat2.M11 = (float) (mat2.M11 + mYY);
mat2.M12 = (float) (mat2.M12 + mYZ);
mat2.M22 = (float) (mat2.M22 + mZZ);
mean.X = (float) (mean.X + mX);
mean.Y = (float) (mean.Y + mY);
mean.Z = (float) (mean.Z + mZ);
tot = 0;
mX = 0;
mY = 0;
mZ = 0;
mXX = 0;
mXY = 0;
mXZ = 0;
mYY = 0;
mYZ = 0;
mZZ = 0;
}
}
}
}
total += tot;
if (Math.abs(total) < 1e-5) {
total = 1.0f;
}
mat2.M00 = (float) ((mat2.M00 + mXX) / total);
mat2.M01 = (float) ((mat2.M01 + mXY) / total);
mat2.M02 = (float) ((mat2.M02 + mXZ) / total);
mat2.M11 = (float) ((mat2.M11 + mYY) / total);
mat2.M12 = (float) ((mat2.M12 + mYZ) / total);
mat2.M22 = (float) ((mat2.M22 + mZZ) / total);
mean.X = (float) ((mean.X + mX) / total);
mean.Y = (float) ((mean.Y + mY) / total);
mean.Z = (float) ((mean.Z + mZ) / total);
// Now make it central (taking off the Center of Mass)
meanProduct.MakeTensorProduct(mean, mean);
mat2.M00 -= meanProduct.M00;
mat2.M01 -= meanProduct.M01;
mat2.M02 -= meanProduct.M02;
mat2.M10 -= meanProduct.M10;
mat2.M11 -= meanProduct.M11;
mat2.M12 -= meanProduct.M12;
mat2.M20 -= meanProduct.M20;
mat2.M21 -= meanProduct.M21;
mat2.M22 -= meanProduct.M22;
}
/**
* Call from the JPanelFlythruMove.
*
* @param command move command.
*/
public void move(String command) {
if (command.equals("lookup")) {
// pitch - look up
Vector3f kRight = new Vector3f();
kRight.UnitCross(m_kViewDirection, m_kViewUp);
Matrix3f kRotate = new Matrix3f();
kRotate.FromAxisAngle(kRight, (float) Math.toRadians(1));
kRotate.Mult(m_kViewDirection, m_kViewDirection);
kRotate.Mult(m_kViewUp, m_kViewUp);
// Notify listener that we are updated.
notifyCallback(EVENT_CHANGE_POSITION);
} else if (command.equals("lookdown")) {
// pitch - look down
Vector3f kRight = new Vector3f();
kRight.UnitCross(m_kViewDirection, m_kViewUp);
Matrix3f kRotate = new Matrix3f();
kRotate.FromAxisAngle(kRight, (float) Math.toRadians(-1));
kRotate.Mult(m_kViewDirection, m_kViewDirection);
kRotate.Mult(m_kViewUp, m_kViewUp);
// Notify listener that we are updated.
notifyCallback(EVENT_CHANGE_POSITION);
} else if (command.equals("lookleft")) {
// yaw - look left
Matrix3f kRotate = new Matrix3f();
kRotate.FromAxisAngle(m_kViewUp, (float) Math.toRadians(1));
kRotate.Mult(m_kViewDirection, m_kViewDirection);
// Notify listener that we are updated.
notifyCallback(EVENT_CHANGE_POSITION);
} else if (command.equals("lookright")) {
// case KeyEvent.VK_RIGHT:
// yaw - look right
Matrix3f kRotate = new Matrix3f();
kRotate.FromAxisAngle(m_kViewUp, (float) Math.toRadians(-1));
kRotate.Mult(m_kViewDirection, m_kViewDirection);
// Notify listener that we are updated.
notifyCallback(EVENT_CHANGE_POSITION);
} else if (command.equals("counterclockwise")) {
// case KeyEvent.VK_F3:
// roll - counterclockwise
Matrix3f kRotate = new Matrix3f();
kRotate.FromAxisAngle(m_kViewDirection, (float) Math.toRadians(-1));
kRotate.Mult(m_kViewUp, m_kViewUp);
// Notify listener that we are updated.
notifyCallback(EVENT_CHANGE_POSITION);
} else if (command.equals("clockwise")) {
// roll - clockwise
Matrix3f kRotate = new Matrix3f();
kRotate.FromAxisAngle(m_kViewDirection, (float) Math.toRadians(1));
kRotate.Mult(m_kViewUp, m_kViewUp);
// Notify listener that we are updated.
notifyCallback(EVENT_CHANGE_POSITION);
} else if (command.equals("escape")) {
// VK_ESCAPE
setIdentityViewOrientation();
} else if (command.equals("home")) {
// case KeyEvent.VK_HOME:
// reset position to the beginning of the path
if (!m_bChooseBranch && (null == m_akBranchChoice)) {
setPathDist(0.0f);
} else {
beep();
}
} else if (command.equals("end")) {
// case KeyEvent.VK_END:
// reset position to the end of the path
if (!m_bChooseBranch && (null == m_akBranchChoice)) {
setPathDist(1.0f);
} else {
beep();
}
} else if (command.equals("forward")) {
// case KeyEvent.VK_UP:
// move forward along the path
if (!m_bChooseBranch) {
doPathStep(1);
} else {
beep();
}
} else if (command.equals("backward")) {
// case KeyEvent.VK_DOWN:
// move backward along the path
if (!m_bChooseBranch) {
doPathStep(-1);
} else {
beep();
}
} else if (command.equals("reverse")) {
// case KeyEvent.VK_R:
// follow path in reverse heading
m_kBranchState.m_bMoveForward = !m_kBranchState.m_bMoveForward;
setPathDist(m_kBranchState.m_fNormalizedPathDist);
} else if (command.equals("prevAnnotatePt")) {
// case KeyEvent.VK_F5:
// go to previous annotate point
if (!m_bChooseBranch && (m_kAnnotateList.getNumItems() > 0)) {
if (--m_iAnnotateListItemSelected < 0) {
m_iAnnotateListItemSelected = m_kAnnotateList.getNumItems() - 1;
}
setCurvePathAnnotateItem(m_iAnnotateListItemSelected);
} else {
beep();
}
} else if (command.equals("nextAnnotatePt")) {
// case KeyEvent.VK_F6:
// go to next annotate point
if (!m_bChooseBranch && (m_kAnnotateList.getNumItems() > 0)) {
if (++m_iAnnotateListItemSelected >= m_kAnnotateList.getNumItems()) {
m_iAnnotateListItemSelected = 0;
}
setCurvePathAnnotateItem(m_iAnnotateListItemSelected);
} else {
beep();
}
} else if (command.equals("nextBranch")) {
// case KeyEvent.VK_SPACE:
// select next branch choice
if (null != m_akBranchChoice) {
setClosestChoiceBranch();
} else {
beep();
}
} else if (command.equals("stepDistanceIncrease")) {
m_fPathStep += 0.1f;
setPathDist(m_kBranchState.m_fNormalizedPathDist);
} else if (command.equals("stepDistanceDecrease")) {
m_fPathStep -= 0.1f;
if (m_fPathStep < 0.1f) {
m_fPathStep = 0.1f;
beep();
}
setPathDist(m_kBranchState.m_fNormalizedPathDist);
} else if (command.equals("gazeDistanceDecrease")) {
m_fGazeDist -= 1.0f;
if (m_fGazeDist < 0.0f) {
m_fGazeDist = 0.0f;
beep();
}
setPathDist(m_kBranchState.m_fNormalizedPathDist);
} else if (command.equals("gazeDistanceIncrease")) {
m_fGazeDist += 1.0f;
setPathDist(m_kBranchState.m_fNormalizedPathDist);
}
}
