protected void calcCounts(CoxPHModel model, final CoxPHTask coxMR) {
CoxPHModel.CoxPHParameters p = model._parms;
CoxPHModel.CoxPHOutput o = model._output;
o.n_missing = o.n - coxMR.n;
o.n = coxMR.n;
for (int j = 0; j < o.x_mean_cat.length; j++)
o.x_mean_cat[j] = coxMR.sumWeightedCatX[j] / coxMR.sumWeights;
for (int j = 0; j < o.x_mean_num.length; j++)
o.x_mean_num[j] = coxMR.dinfo()._normSub[j] + coxMR.sumWeightedNumX[j] / coxMR.sumWeights;
System.arraycopy(
coxMR.dinfo()._normSub, o.x_mean_num.length, o.mean_offset, 0, o.mean_offset.length);
int nz = 0;
for (int t = 0; t < coxMR.countEvents.length; ++t) {
o.total_event += coxMR.countEvents[t];
if (coxMR.sizeEvents[t] > 0 || coxMR.sizeCensored[t] > 0) {
o.time[nz] = o.min_time + t;
o.n_risk[nz] = coxMR.sizeRiskSet[t];
o.n_event[nz] = coxMR.sizeEvents[t];
o.n_censor[nz] = coxMR.sizeCensored[t];
nz++;
}
}
if (p.start_column == null)
for (int t = o.n_risk.length - 2; t >= 0; --t) o.n_risk[t] += o.n_risk[t + 1];
}
