protected void writeAuditTrail(String strPath, String strUser, StringBuffer sbValues) {
BufferedReader reader = WFileUtil.openReadFile(strPath);
String strLine;
ArrayList aListData = WUtil.strToAList(sbValues.toString(), false, "\n");
StringBuffer sbData = sbValues;
String strPnl = (this instanceof DisplayTemplate) ? "Data Template " : "Data Dir ";
if (reader == null) {
Messages.postDebug("Error opening file " + strPath);
return;
}
try {
while ((strLine = reader.readLine()) != null) {
// if the line in the file is not in the arraylist,
// then that line has been deleted
if (!aListData.contains(strLine))
WUserUtil.writeAuditTrail(new Date(), strUser, "Deleted " + strPnl + strLine);
// remove the lines that are also in the file or those which
// have been deleted.
aListData.remove(strLine);
}
// Traverse through the remaining new lines in the arraylist,
// and write it to the audit trail
for (int i = 0; i < aListData.size(); i++) {
strLine = (String) aListData.get(i);
WUserUtil.writeAuditTrail(new Date(), strUser, "Added " + strPnl + strLine);
}
reader.close();
} catch (Exception e) {
e.printStackTrace();
}
}
/** Displays the labels and the values for the panel. */
protected void displayPnlFields(HashMap hmPnl) {
if (hmPnl == null || hmPnl.isEmpty()) return;
Iterator keySetItr = hmPnl.keySet().iterator();
String strLabel = "";
String strValue = "";
// if the file is empty, then create an empty set of textfields.
if (hmPnl == null || hmPnl.isEmpty()) {
displayNewTxf("", "");
return;
}
Container container = getParent();
if (container != null) container.setVisible(false);
try {
// Get each set of label and value, and display them.
while (keySetItr.hasNext()) {
strLabel = (String) keySetItr.next();
strValue = (String) hmPnl.get(strLabel);
displayNewTxf(strLabel, strValue);
}
if (container != null) container.setVisible(true);
revalidate();
repaint();
} catch (Exception e) {
Messages.writeStackTrace(e);
// e.printStackTrace();
Messages.postDebug(e.toString());
}
}
/** Write file with position and size of the login box */
public static void writePersistence() {
Messages.postDebug("LoginBox", "LoginBox.writePersistence");
// If the panel has not been created, don't try to write a file
if (position == null) return;
String filepath = FileUtil.savePath("USER/PERSISTENCE/LoginPanel");
FileWriter fw;
PrintWriter os;
try {
File file = new File(filepath);
fw = new FileWriter(file);
os = new PrintWriter(fw);
os.println("Login Panel");
os.println(height);
os.println(width);
double xd = position.getX();
int xi = (int) xd;
os.println(xi);
double yd = position.getY();
int yi = (int) yd;
os.println(yi);
os.close();
} catch (Exception er) {
Messages.postError("Problem creating " + filepath);
Messages.writeStackTrace(er);
}
}
protected String getSampleName(String strDir, String strTray) {
String strSampleName = "";
String strSample;
int nTray = 0;
try {
nTray = Integer.parseInt(strTray);
} catch (Exception e) {
}
if (nTray <= 0) return strSampleName;
String cmd =
"SELECT loc_,studystatus from study WHERE (autodir=\'"
+ strDir
+ "\') AND (hostname=\'"
+ getHost()
+ "\')";
// NB: bArrSample[0] is not used; array implicitly initialized false
boolean[] bArrSample = new boolean[nTray + 1];
m_dbResult = null;
try {
m_dbResult = getdbmanager().executeQuery(cmd);
} catch (Exception e) {
return strSampleName;
}
if (m_dbResult == null) return strSampleName;
try {
while (m_dbResult.next()) {
strSample = m_dbResult.getString(1);
int nSample = 0;
nSample = Integer.parseInt(strSample);
try {
bArrSample[nSample] = true;
} catch (IndexOutOfBoundsException ioobe) {
Messages.postDebug("getSampleName: index out of bounds: " + nSample);
}
}
for (int i = 1; i < bArrSample.length; i++) {
if (!bArrSample[i]) {
strSampleName = String.valueOf(i);
break;
}
}
} catch (Exception e) {
// e.printStackTrace();
Messages.writeStackTrace(e);
}
return strSampleName;
}
/** Reads the file, and sets the label and the values in the hashmap. */
protected void setHM(String strPath, HashMap hmPnl) {
BufferedReader reader = WFileUtil.openReadFile(strPath);
boolean bFileEmpty = true;
boolean bPart11Pnl = isPart11Pnl();
boolean bDefaultFile = isDefaultFile();
// if the file is empty, then create an empty set of textfields.
if (reader == null) {
// displayNewTxf("","");
return;
}
String strLine = null;
StringTokenizer strTok;
try {
// read the file, and create a new set of textfields,
// with the values from the file.
while ((strLine = reader.readLine()) != null) {
String strLabel = "";
String strValue = "";
bFileEmpty = false;
if (strLine.startsWith("#")
|| strLine.startsWith("@")
|| strLine.startsWith("%")
|| strLine.startsWith("\"@")) continue;
if (strLine.startsWith("\"")) strTok = new StringTokenizer(strLine, "\"");
else strTok = new StringTokenizer(strLine, File.pathSeparator + ",\n");
if (!strTok.hasMoreTokens()) continue;
strLabel = strTok.nextToken();
// the format for the part11 Default file is a little different
// only parse out the part11Dir, and don't display other defaults
if (bPart11Pnl && bDefaultFile) {
if (!strLabel.equalsIgnoreCase("part11Dir")) continue;
}
if (strTok.hasMoreTokens()) {
while (strTok.hasMoreTokens()) {
strValue += strTok.nextToken();
if (strTok.hasMoreTokens()) strValue += " ";
}
}
// append "/data/$name" to part11Dir
if (bPart11Pnl && bDefaultFile && strLabel.equalsIgnoreCase("part11Dir")) {
StringBuffer sbDir = new StringBuffer(strValue);
if (sbDir.lastIndexOf(File.separator) < sbDir.length() - 1)
sbDir.append(File.separator);
sbDir.append("data" + File.separator + "$");
sbDir.append(WGlobal.NAME);
strValue = sbDir.toString();
}
// displayNewTxf(strLabel, strValue);
if (strLabel != null && strLabel.trim().length() > 0) hmPnl.put(strLabel, strValue);
}
reader.close();
} catch (Exception e) {
Messages.writeStackTrace(e);
// e.printStackTrace();
Messages.postDebug(e.toString());
}
}
protected void enterLogin() {
char[] password = m_passwordField.getPassword();
String strUser = (String) m_cmbUser.getSelectedItem();
setCursor(Cursor.getPredefinedCursor(Cursor.WAIT_CURSOR));
boolean blogin = WUserUtil.isOperatorNameok(strUser, false);
if (blogin) {
blogin = vnmrjPassword(strUser, password);
if (!blogin) blogin = unixPassword(strUser, password);
}
if (blogin) {
m_lblLogin.setForeground(Color.black);
m_lblLogin.setText("Login Successful");
m_lblLogin.setVisible(true);
// Get the Email column string for access to the operator data
String emStr = vnmr.util.Util.getLabel("_admin_Email");
String stremail = WUserUtil.getOperatordata(strUser, emStr);
// Get the Panel Level column string for access to the operator data
String plStr = vnmr.util.Util.getLabel("_admin_Panel_Level");
String strPanel = WUserUtil.getOperatordata(strUser, plStr);
if (stremail == null || stremail.equals("null")) stremail = "";
try {
Integer.parseInt(strPanel);
} catch (Exception e) {
strPanel = WGlobal.PANELLEVEL;
}
m_trayTimer.stop();
Messages.postDebug(" Login: "******"appdir('reset','")
.append(strUser)
.append("','")
.append(stremail)
.append("',")
.append(strPanel)
.append(")")
.toString());
exp.sendToVnmr("vnmrjcmd('util', 'bgReady')\n");
}
setVisible(false);
// Save the current position and size of this panel in case it
// was changed
Dimension size = getSize();
width = size.width;
height = size.height;
position = getLocation();
writePersistence();
// Call the macro to update this operator's
// ExperimentSelector_operatorName.xml file
// from the protocols themselves. This macro will
// cause an update of the ES when it is finished
// Util.getAppIF().sendToVnmr("updateExpSelector");
// I am not sure why we need to force updates since updateExpSelector
// should have caused an update by writing to ES_op.xml file.
// However, it works better if we do the force update.
// ExpSelector.setForceUpdate(true);
} else {
m_lblLogin.setForeground(DisplayOptions.getColor("Error"));
// m_lblLogin.setText("<HTML>Incorrect username/password <p> Please try again </HTML>");
m_lblLogin.setVisible(true);
}
setCursor(Cursor.getDefaultCursor());
}
