public void operateOnPartition(
PartitionDefinition definition, RowIterator inputIterator, RowEmitter outputEmitter) {
errorHandler.enterOperateOnPartition(definition, inputIterator, outputEmitter);
try {
// Collect input rows for observed and expected values
ArrayList<Double> expectedList = new ArrayList<Double>();
ArrayList<Long> observedList = new ArrayList<Long>();
while (inputIterator.advanceToNextRow()) {
errorHandler.enterOperateOnRow(inputIterator, outputEmitter);
if (inputIterator.isNullAt(observedArgumentIdx)
|| inputIterator.isNullAt(expectedArgumentIdx))
throw new IllegalArgumentException("observed and expected values cannot be null");
expectedList.add(inputIterator.getDoubleAt(expectedArgumentIdx));
observedList.add(inputIterator.getLongAt(observedArgumentIdx));
errorHandler.exitOperateOnRow();
}
double[] expected = new double[expectedList.size()];
for (int i = 0; i < expected.length; i++) expected[i] = expectedList.get(i);
long[] observed = new long[observedList.size()];
for (int i = 0; i < observed.length; i++) observed[i] = observedList.get(i);
// Run test
double pValue = chiSquareTest.chiSquareTest(expected, observed);
// Emit result
accumulator.emit(inputIterator, outputEmitter);
outputEmitter.addDouble(pValue);
outputEmitter.emitRow();
} catch (IllegalArgumentException e) {
errorHandler.catchException(e);
return; // End this partition and go to next if stopOnError is set to false (otherwise
// exception is thrown)
}
errorHandler.exitOperateOnPartition();
}
/* (non-Javadoc)
* @see com.asterdata.ncluster.sqlmr.Drainable#drainOutputRows(com.asterdata.ncluster.sqlmr.data.RowEmitter)
*
* Send last logging information
*/
public void drainOutputRows(RowEmitter outputEmitter) {
errorHandler.drainOutputRows();
}
