private void add(PptTopLevel ppt, ValueTuple vt) {
// Add the sample to any splitters
if (ppt.has_splitters()) {
for (PptSplitter ppt_split : ppt.splitters) {
PptConditional ppt_cond = ppt_split.choose_conditional(vt);
if (ppt_cond != null) add(ppt_cond, vt);
else debug.fine(": sample doesn't pick conditional");
}
}
// if this is a numbered exit, apply to the combined exit as well
if (!(ppt instanceof PptConditional) && ppt.ppt_name.isNumberedExitPoint()) {
PptTopLevel parent = all_ppts.get(ppt.ppt_name.makeExit());
if (parent != null) {
parent.get_missingOutOfBounds(ppt, vt);
add(parent, vt);
}
}
// If the point has no variables, skip it
if (ppt.var_infos.length == 0) return;
// We should have received sample here before, or there is nothing
// to check.
// Yoav added: It can be that the different dtrace and inv files have different program points
if (false && ppt.num_samples() <= 0)
Assert.assertTrue(
ppt.num_samples() > 0,
"ppt " + ppt.name + " has 0 samples and " + ppt.var_infos.length + " variables");
// Loop through each slice
slice_loop:
for (Iterator<PptSlice> i = ppt.views_iterator(); i.hasNext(); ) {
PptSlice slice = i.next();
if (debug_detail.isLoggable(Level.FINE))
debug_detail.fine(
": processing slice " + slice + "vars: " + Debug.toString(slice.var_infos, vt));
// If any variables are missing, skip this slice
for (int j = 0; j < slice.var_infos.length; j++) {
VarInfo v = slice.var_infos[j];
int mod = vt.getModified(v);
if (v.isMissing(vt)) {
if (debug_detail.isLoggable(Level.FINE))
debug_detail.fine(": : Skipping slice, " + v.name() + " missing");
continue slice_loop;
}
if (v.missingOutOfBounds()) {
if (debug_detail.isLoggable(Level.FINE))
debug.fine(": : Skipping slice, " + v.name() + " out of bounds");
continue slice_loop;
}
}
// Loop through each invariant
for (Invariant inv : slice.invs) {
if (debug_detail.isLoggable(Level.FINE))
debug_detail.fine(": : Processing invariant: " + inv);
if (!inv.isActive()) {
if (debug_detail.isLoggable(Level.FINE))
debug_detail.fine(": : skipped non-active " + inv);
continue;
}
// Yoav added
if (!activeInvariants.contains(inv)) {
// System.out.printf ("skipping invariant %s:%s\n", inv.ppt.name(),
// inv.format());
continue;
}
// String invRep = invariant2str(ppt, inv);
testedInvariants.add(inv);
InvariantStatus status = inv.add_sample(vt, 1);
sample_cnt++;
if (status != InvariantStatus.NO_CHANGE) {
LineNumberReader lnr = FileIO.data_trace_state.reader;
String line = (lnr == null) ? "?" : String.valueOf(lnr.getLineNumber());
if (!quiet) {
output_stream.println(
"At ppt "
+ ppt.name
+ ", Invariant '"
+ inv.format()
+ "' invalidated by sample "
+ Debug.toString(slice.var_infos, vt)
+ "at line "
+ line
+ " in file "
+ FileIO.data_trace_state.filename);
}
failedInvariants.add(inv);
activeInvariants.remove(inv);
error_cnt++;
}
}
}
}
/**
* This does the work of main, but it never calls System.exit, so it is appropriate to be called
* progrmmatically. Termination of the program with a message to the user is indicated by throwing
* Daikon.TerminationMessage.
*
* @see #main(String[])
* @see daikon.Daikon.TerminationMessage
*/
public static void mainHelper(final String[] args)
throws FileNotFoundException, StreamCorruptedException, OptionalDataException, IOException,
ClassNotFoundException {
daikon.LogHelper.setupLogs(daikon.LogHelper.INFO);
LongOpt[] longopts =
new LongOpt[] {
new LongOpt(Daikon.config_option_SWITCH, LongOpt.REQUIRED_ARGUMENT, null, 0),
new LongOpt(output_SWITCH, LongOpt.REQUIRED_ARGUMENT, null, 0),
new LongOpt(dir_SWITCH, LongOpt.REQUIRED_ARGUMENT, null, 0),
new LongOpt(conf_SWITCH, LongOpt.NO_ARGUMENT, null, 0),
new LongOpt(filter_SWITCH, LongOpt.NO_ARGUMENT, null, 0),
new LongOpt(Daikon.debugAll_SWITCH, LongOpt.NO_ARGUMENT, null, 0),
new LongOpt(Daikon.debug_SWITCH, LongOpt.REQUIRED_ARGUMENT, null, 0),
new LongOpt(Daikon.ppt_regexp_SWITCH, LongOpt.REQUIRED_ARGUMENT, null, 0),
new LongOpt(Daikon.track_SWITCH, LongOpt.REQUIRED_ARGUMENT, null, 0),
};
Getopt g = new Getopt("daikon.tools.InvariantChecker", args, "h", longopts);
int c;
while ((c = g.getopt()) != -1) {
switch (c) {
case 0:
// got a long option
String option_name = longopts[g.getLongind()].getName();
if (Daikon.help_SWITCH.equals(option_name)) {
System.out.println(usage);
throw new Daikon.TerminationMessage();
} else if (conf_SWITCH.equals(option_name)) {
doConf = true;
} else if (filter_SWITCH.equals(option_name)) {
doFilter = true;
} else if (dir_SWITCH.equals(option_name)) {
dir_file = new File(g.getOptarg());
if (!dir_file.exists() || !dir_file.isDirectory())
throw new Daikon.TerminationMessage("Error reading the directory " + dir_file);
} else if (output_SWITCH.equals(option_name)) {
output_file = new File(g.getOptarg());
output_stream = new PrintStream(new FileOutputStream(output_file));
} else if (Daikon.config_option_SWITCH.equals(option_name)) {
String item = g.getOptarg();
daikon.config.Configuration.getInstance().apply(item);
break;
} else if (Daikon.debugAll_SWITCH.equals(option_name)) {
Global.debugAll = true;
} else if (Daikon.debug_SWITCH.equals(option_name)) {
LogHelper.setLevel(g.getOptarg(), LogHelper.FINE);
} else if (Daikon.track_SWITCH.equals(option_name)) {
LogHelper.setLevel("daikon.Debug", LogHelper.FINE);
String error = Debug.add_track(g.getOptarg());
if (error != null) {
throw new Daikon.TerminationMessage(
"Error parsing track argument '" + g.getOptarg() + "' - " + error);
}
} else {
throw new RuntimeException("Unknown long option received: " + option_name);
}
break;
case 'h':
System.out.println(usage);
throw new Daikon.TerminationMessage();
case '?':
break; // getopt() already printed an error
default:
System.out.println("getopt() returned " + c);
break;
}
}
// Loop through each filename specified
for (int i = g.getOptind(); i < args.length; i++) {
// Get the file and make sure it exists
File file = new File(args[i]);
if (!file.exists()) {
throw new Error("File " + file + " not found.");
}
// These aren't "endsWith()" because there might be a suffix on the end
// (eg, a date).
String filename = file.toString();
if (filename.indexOf(".inv") != -1) {
if (inv_file != null) {
throw new Daikon.TerminationMessage("multiple inv files specified", usage);
}
inv_file = file;
} else if (filename.indexOf(".dtrace") != -1) {
dtrace_files.add(filename);
} else {
throw new Error("Unrecognized argument: " + file);
}
}
if (dir_file == null) {
checkInvariants();
return;
}
// Yoav additions:
File[] filesInDir = dir_file.listFiles();
if (filesInDir == null || filesInDir.length == 0)
throw new Daikon.TerminationMessage("The directory " + dir_file + " is empty", usage);
ArrayList<File> invariants = new ArrayList<File>();
for (File f : filesInDir) if (f.toString().indexOf(".inv") != -1) invariants.add(f);
if (invariants.size() == 0)
throw new Daikon.TerminationMessage(
"Did not find any invariant files in the directory " + dir_file, usage);
ArrayList<File> dtraces = new ArrayList<File>();
for (File f : filesInDir) if (f.toString().indexOf(".dtrace") != -1) dtraces.add(f);
if (dtraces.size() == 0)
throw new Daikon.TerminationMessage(
"Did not find any dtrace files in the directory " + dir_file, usage);
System.out.println(
"Collecting data for invariants files " + invariants + " and dtrace files " + dtraces);
dtrace_files.clear();
for (File dtrace : dtraces) {
dtrace_files.add(dtrace.toString());
}
String commaLine = "";
for (File inFile : invariants) {
String name = inFile.getName().replace(".inv", "").replace(".gz", "");
commaLine += "," + name;
}
outputComma.add(commaLine);
commaLine = "";
for (File inFile : invariants) {
inv_file = inFile;
failedInvariants.clear();
testedInvariants.clear();
error_cnt = 0;
output_stream =
new PrintStream(
new FileOutputStream(
inFile.toString().replace(".inv", "").replace(".gz", "")
+ ".false-positives.txt"));
checkInvariants();
output_stream.close();
int failedCount = failedInvariants.size();
int testedCount = testedInvariants.size();
String percent = toPercentage(failedCount, testedCount);
commaLine += "," + percent;
}
outputComma.add(commaLine);
System.out.println();
for (String output : outputComma) System.out.println(output);
}
private static void checkInvariants() throws IOException {
// Read the invariant file
PptMap ppts = FileIO.read_serialized_pptmap(inv_file, true);
// Yoav: make sure we have unique invariants
InvariantFilters fi = InvariantFilters.defaultFilters();
// Set<String> allInvariantsStr = new HashSet<String>();
Set<Invariant> allInvariants = new HashSet<Invariant>();
for (PptTopLevel ppt : ppts.all_ppts())
for (Iterator<PptSlice> i = ppt.views_iterator(); i.hasNext(); ) {
PptSlice slice = i.next();
for (Invariant inv : slice.invs) {
if (doConf && inv.getConfidence() < Invariant.dkconfig_confidence_limit) {
// System.out.printf ("inv ignored (conf): %s:%s\n", inv.ppt.name(),
// inv.format());
continue;
}
if (doFilter && fi.shouldKeep(inv) == null) {
// System.out.printf ("inv ignored (filter): %s:%s\n",
// inv.ppt.name(), inv.format());
continue;
}
activeInvariants.add(inv);
// String n = invariant2str(ppt, inv);
// if (!allInvariants.contains(inv) && allInvariantsStr.contains(n)) throw new
// Daikon.TerminationMessage("Two invariants have the same ppt.name+inv.rep:"+n);
allInvariants.add(inv);
// allInvariantsStr.add(n);
}
}
// Read and process the data trace files
FileIO.Processor processor = new InvariantCheckProcessor();
Daikon.FileIOProgress progress = new Daikon.FileIOProgress();
progress.start();
progress.clear();
FileIO.read_data_trace_files(dtrace_files, ppts, processor, false);
progress.shouldStop = true;
System.out.println();
System.out.printf(
"%s: %,d errors found in %,d samples (%s)\n",
inv_file, error_cnt, sample_cnt, toPercentage(error_cnt, sample_cnt));
int failedCount = failedInvariants.size();
int testedCount = testedInvariants.size();
String percent = toPercentage(failedCount, testedCount);
System.out.println(
inv_file
+ ": "
+ failedCount
+ " false positives, out of "
+ testedCount
+ ", which is "
+ percent
+ ".");
if (false) {
for (Invariant inv : failedInvariants) {
System.out.printf("+%s:%s\n", inv.ppt.name(), inv.format());
}
}
}