/** Read an Entry from the given EntrySource and make a new EntryEdit component for the Entry. */
private void getEntryEditFromEntrySource(final EntrySource entry_source) {
SwingWorker entryWorker =
new SwingWorker() {
EntryEdit entry_edit;
public Object construct() {
try {
final Entry entry = entry_source.getEntry(true);
if (entry == null) return null;
final EntryGroup entry_group = new SimpleEntryGroup(entry.getBases());
entry_group.add(entry);
entry_edit = new EntryEdit(entry_group);
} catch (OutOfRangeException e) {
new MessageDialog(
ArtemisMain.this,
"read failed: one of the features in "
+ " the entry has an out of range "
+ "location: "
+ e.getMessage());
} catch (NoSequenceException e) {
new MessageDialog(ArtemisMain.this, "read failed: entry contains no sequence");
} catch (IOException e) {
new MessageDialog(ArtemisMain.this, "read failed due to IO error: " + e);
}
return null;
}
public void finished() {
if (entry_edit != null) entry_edit.setVisible(true);
}
};
entryWorker.start();
}
/** Launch database manager window */
private void launchDatabaseJFrame() {
SwingWorker entryWorker =
new SwingWorker() {
public Object construct() {
getStatusLabel().setText("Connecting ...");
DatabaseEntrySource entry_source = new DatabaseEntrySource();
boolean promptUser = true;
if (System.getProperty("read_only") != null) promptUser = false;
if (!entry_source.setLocation(promptUser)) return null;
JFrame frame = new JFrame("Organism List");
final DatabaseJPanel pane = new DatabaseJPanel(entry_source, ArtemisMain.this);
frame.getContentPane().add(pane);
frame.pack();
Utilities.rightJustifyFrame(frame);
frame.setVisible(true);
// frame.setJMenuBar(pane.makeMenuBar(entry_source, ArtemisMain.this));
getStatusLabel().setText("");
return null;
}
};
entryWorker.start();
}