private void loadToDB(String[] fields) {
if (fields.length >= 4) {
String accession = fields[0];
String pathwayId = fields[1];
String pathwayUrl = fields[2];
String pathwayName = fields[3];
String status = fields[4];
String species = fields[5];
// check if accession is an enzyme
UniprotEntry enzyme = uniprotEntryRepository.findByAccession(accession);
if (enzyme != null) {
// EnzymePortalPathways pathways = new EnzymePortalPathways();
// pathways.setUniprotAccession(enzyme);
// pathways.setPathwayId(pathwayId);
// pathways.setPathwayName(pathwayName);
// pathways.setPathwayUrl(pathwayUrl);
// pathways.setSpecies(species);
// pathways.setStatus(status);
// pathwaysRepository.saveAndFlush(pathways);
parserService.createPathway(accession, pathwayId, pathwayUrl, pathwayName, status, species);
/** Printing the value read from file to the console */
// System.out.println(accession + "\t" + pathwayId + "\t" + pathwayUrl + "\t"
// + pathwayName + "\t" + status + "\t" + species);
}
}
}
private void loadToDB(List<String> fields) {
if (fields.size() == 6) {
String accession = fields.get(0);
String pathwayId = fields.get(1);
String pathwayUrl = fields.get(2);
String pathwayName = fields.get(3);
String status = fields.get(4);
String species = fields.get(5);
// check if accession is an enzyme
UniprotEntry enzyme = uniprotEntryRepository.findByAccession(accession);
if (enzyme != null) {
parserService.createPathway(accession, pathwayId, pathwayUrl, pathwayName, status, species);
/** // * Printing the value read from file to the console // */
// System.out.println(accession + "\t" + pathwayId + "\t" + pathwayUrl + "\t"
// + pathwayName + "\t" + status + "\t" + species);
}
}
}