@Inject
public GuysDataForGeneController(
AnalyticsSearchService analyticsSearchService,
SpeciesFactory speciesFactory,
SingleCellFileHub singleCellFileHub)
throws URISyntaxException, IOException {
this.analyticsSearchService = analyticsSearchService;
this.SPECIES_IN_GUYS_EXPERIMENT = speciesFactory.create("mus musculus");
ImmutableMap.Builder<String, String> b = new ImmutableMap.Builder<>();
for (String[] bits : singleCellFileHub.getGuysIdentifiers().get().readAll()) {
if (bits.length == 2) {
b.put(bits[1], bits[0]);
} else {
throw new IllegalStateException("Bad line in file: " + Arrays.deepToString(bits));
}
}
guysIdentifiersPerEnsemblId = b.build();
}
@Before
public void setUp() {
species = speciesFactory.create("oryza sativa");
}