/**
* \brief Mutual shoving : The movement by shoving of an agent is calculated based on the cell
* overlap and added to the agents movement vector.
*
* <p>Mutual shoving : The movement by shoving of an agent is calculated based on the cell overlap
* and added to the agents movement vector. Both agents are moved of half the overlapping distance
* in opposite directions.
*
* @param aNeighbour Reference to the potentially shoving neighbour
* @param isMutual Whether movement is shared between two agents or applied only to this one
* @param gain Double noting change in position
* @return Boolean stating whether shoving is detected (true) or not (false)
*/
public boolean addPushMovement(LocatedAgent aNeighbour, boolean isMutual, double gain) {
double d, distance;
if (aNeighbour == this) return false;
// Build the escape vector and find the distance between you and your
// neighbourhood
d = computeDifferenceVector(_location, aNeighbour._location);
_diff.normalizeVector();
// Compute effective cell-cell distance
distance = getShoveRadius() + aNeighbour.getShoveRadius();
distance += getSpeciesParam().shoveLimit;
distance = d - distance;
/* Apply shoving _________________________________________________ */
// Compute shoving distance for the current agent
if (distance <= 0) {
if (isMutual) {
_diff.times(gain * 0.5 * Math.abs(distance));
this._movement.add(_diff);
aNeighbour._movement.subtract(_diff);
} else {
_diff.times(Math.abs(gain * distance));
this._movement.add(_diff);
}
return true;
} else {
return false;
}
}
/**
* \brief Set the movement vector that states where to put a newly-created particle
*
* <p>Set the movement vector that states where to put a newly-created particle
*
* @param distance Distance between the this agent and the new agent
*/
public void setDivisionDirection(double distance) {
double phi, theta;
phi = 2 * Math.PI * ExtraMath.getUniRandDbl();
theta = 2 * Math.PI * ExtraMath.getUniRandDbl();
_divisionDirection.x = distance * Math.sin(phi) * Math.cos(theta);
_divisionDirection.y = distance * Math.sin(phi) * Math.sin(theta);
_divisionDirection.z = (_agentGrid.is3D ? distance * Math.cos(phi) : 0);
}
/**
* \brief Pulling : The movement of agents by a shrinking biofilm. Move calculated and added to
* the agents movement vector.
*
* <p>The movement of agents by a shrinking biofilm. Move calculated and added to the agents
* movement vector.
*
* @param aNeighbor Reference to the potentially shoving neighbour
* @param isMutual Whether movement is shared between two agents or applied only to this one
* @param gain Double noting change in position
* @return Boolean stating whether pulling is detected (true) or not (false)
*/
public boolean addSpringMovement(LocatedAgent aNeighbor, boolean isMutual, double gain) {
double d, distance, delta;
if (aNeighbor == this) return false;
// Build the escape vector and find the distance between you and your
// neighbourhood
d = computeDifferenceVector(_location, aNeighbor._location);
_diff.normalizeVector();
distance = getShoveRadius() + aNeighbor.getShoveRadius();
distance += getSpeciesParam().shoveLimit;
delta = d - distance;
double lMax = _totalRadius;
if (delta > 0) gain *= Math.exp(-delta * 5 / (lMax));
if (delta > lMax) gain = 0;
/* Apply shoving _________________________________________________ */
if (isMutual) {
_diff.times(-0.5 * delta * gain);
this._movement.add(_diff);
aNeighbor._movement.subtract(_diff);
} else {
_diff.times(-delta * gain);
this._movement.add(_diff);
}
return (_movement.norm() > _radius * gain);
}
/**
* \brief Computes the shortest distance between this agent and another, stored as
* ContinuousVectors. This may be around the cyclic boundary
*
* <p>Computes the distance between this agent and another, stored as ContinuousVectors. This may
* be around the cyclic boundary
*
* @param me ContinuousVector stating first agent location
* @param him ContinuousVector stating other agent location
* @return the shortest movement vector to go from a to b, take into account the cyclic boundary
* @see addOverlapMovement
* @see addPullMovement works in 2 and 3D
*/
public double computeDifferenceVector(ContinuousVector me, ContinuousVector him) {
double gridLength;
_diff.x = me.x - him.x;
// check periodicity in X
gridLength = _species.domain.length_X;
if (Math.abs(_diff.x) > .5 * gridLength) _diff.x -= Math.signum(_diff.x) * gridLength;
_diff.y = me.y - him.y;
// check periodicity in Y
gridLength = _species.domain.length_Y;
if (Math.abs(_diff.y) > .5 * gridLength) _diff.y -= Math.signum(_diff.y) * gridLength;
if (_agentGrid.is3D) {
_diff.z = me.z - him.z;
// check periodicity in Z
gridLength = _species.domain.length_Z;
if (Math.abs(_diff.z) > .5 * gridLength) _diff.z -= Math.signum(_diff.z) * gridLength;
} else {
_diff.z = 0;
}
double d = Math.sqrt(_diff.x * _diff.x + _diff.y * _diff.y + _diff.z * _diff.z);
if (d == 0) {
d = 1e-2 * _radius;
_diff.alea(_agentGrid.is3D);
}
return d;
}