void initFiles() {
String parentDir = params.sget("Data Dir") + File.separator;
imFileWd = parentDir + "imWd.txt";
FileUtil.initFile(
imFileWd, params, "Stress Met not coarse grained in time, dead sites included");
imFileNd = parentDir + "imNd.txt";
FileUtil.initFile(
imFileNd, params, "Stress Met not coarse grained in time, no dead sites included");
for (int i = 0; i < pow; i++) {
int dx = (int) Math.pow(2, i);
String dirName_wd = parentDir + "wd" + File.separator + "dx" + dx + File.separator;
FileUtil.makeDirs(dirName_wd);
String dirName_nd = parentDir + "nd" + File.separator + "dx" + dx + File.separator;
FileUtil.makeDirs(dirName_nd);
String im = " Inverse Coarse-grained Metric File: ";
String nd = " No dead sites included in metric calculation. ";
String wd = " Dead sites included in metric calculation. ";
String time = " time (Plate Updates), ";
String imm = " inverse cg metric.";
cgFiles[i][0] = dirName_nd + "m.txt";
FileUtil.initFile(cgFiles[i][0], params, im + nd + time + " stress" + imm);
cgFiles[i][1] = dirName_wd + "m.txt";
FileUtil.initFile(cgFiles[i][1], params, im + wd + time + " stress" + imm);
cgFiles[i][2] = dirName_nd + "a.txt";
FileUtil.initFile(cgFiles[i][2], params, im + nd + time + " activity" + imm);
cgFiles[i][3] = dirName_wd + "a.txt";
FileUtil.initFile(cgFiles[i][3], params, im + wd + time + " activity" + imm);
cgFiles[i][4] = dirName_nd + "s.txt";
FileUtil.initFile(cgFiles[i][4], params, im + nd + time + " size-activity" + imm);
cgFiles[i][5] = dirName_wd + "s.txt";
FileUtil.initFile(cgFiles[i][5], params, im + wd + time + " size-activity" + imm);
}
sizeHistFile = parentDir + "sh.txt";
}
void writeAccumulatedData() {
FileUtil.initFile(sizeHistFile, params, " Avalanch Size Histogram Data File");
FileUtil.printHistToFile(sizeHistFile, sizeHist);
for (int i = 0; i < pow; i++) {
for (int j = 0; j < 4; j++) {
FileUtil.printAccumToFileNoErrorBars(cgFiles[i][j], cgMetsAcc[i][j]);
}
}
// clear temp accumulators
for (int i = 0; i < pow; i++) {
for (int j = 0; j < 4; j++) {
cgMetsAcc[i][j].clear();
}
}
}