@Test
public void test_copy_participant_evidence_properties() {
ParticipantEvidence sourceParticipant =
new DefaultParticipantEvidence(InteractorUtils.createUnknownBasicInteractor());
sourceParticipant.setStoichiometry(new DefaultStoichiometry(3));
sourceParticipant
.getCausalRelationships()
.add(
new DefaultCausalRelationship(
new DefaultCvTerm("decrease"), new DefaultParticipant(new DefaultProtein("p1"))));
sourceParticipant.setBiologicalRole(new DefaultCvTerm("enzyme"));
sourceParticipant.getAliases().add(new DefaultAlias("test alias"));
sourceParticipant.getXrefs().add(new DefaultXref(new DefaultCvTerm("test database"), "xxxx"));
sourceParticipant
.getAnnotations()
.add(new DefaultAnnotation(new DefaultCvTerm("test comment"), "comment"));
sourceParticipant.addFeature(new DefaultFeatureEvidence("test", "test feature"));
sourceParticipant.setInteraction(new DefaultInteractionEvidence());
sourceParticipant.setExperimentalRole(new DefaultCvTerm("bait"));
sourceParticipant.setExpressedInOrganism(new DefaultOrganism(-1));
sourceParticipant.getExperimentalPreparations().add(new DefaultCvTerm("test preparation"));
sourceParticipant
.getConfidences()
.add(new DefaultConfidence(new DefaultCvTerm("author-score"), "high"));
sourceParticipant
.getParameters()
.add(new DefaultParameter(new DefaultCvTerm("kd"), new ParameterValue(new BigDecimal(3))));
sourceParticipant.getIdentificationMethods().add(new DefaultCvTerm("test method"));
ParticipantEvidence targetParticipant =
new DefaultParticipantEvidence(new DefaultProtein("p2"));
ParticipantCloner.copyAndOverrideParticipantEvidenceProperties(
sourceParticipant, targetParticipant, false);
Assert.assertEquals(1, targetParticipant.getXrefs().size());
Assert.assertEquals(1, targetParticipant.getAnnotations().size());
Assert.assertEquals(1, targetParticipant.getAliases().size());
Assert.assertEquals(1, targetParticipant.getFeatures().size());
Assert.assertEquals(1, targetParticipant.getParameters().size());
Assert.assertEquals(1, targetParticipant.getConfidences().size());
Assert.assertEquals(1, targetParticipant.getExperimentalPreparations().size());
Assert.assertEquals(1, targetParticipant.getIdentificationMethods().size());
Assert.assertNull(targetParticipant.getInteraction());
Assert.assertTrue(
targetParticipant.getXrefs().iterator().next()
== sourceParticipant.getXrefs().iterator().next());
Assert.assertTrue(
targetParticipant.getAliases().iterator().next()
== sourceParticipant.getAliases().iterator().next());
Assert.assertTrue(
targetParticipant.getAnnotations().iterator().next()
== sourceParticipant.getAnnotations().iterator().next());
Assert.assertTrue(
targetParticipant.getFeatures().iterator().next()
== sourceParticipant.getFeatures().iterator().next());
Assert.assertTrue(targetParticipant.getInteractor() == sourceParticipant.getInteractor());
Assert.assertTrue(targetParticipant.getStoichiometry() == sourceParticipant.getStoichiometry());
Assert.assertTrue(
targetParticipant.getBiologicalRole() == sourceParticipant.getBiologicalRole());
Assert.assertTrue(
targetParticipant.getCausalRelationships().iterator().next()
== sourceParticipant.getCausalRelationships().iterator().next());
Assert.assertTrue(
targetParticipant.getFeatures().iterator().next().getParticipant() == sourceParticipant);
Assert.assertTrue(
targetParticipant.getExperimentalRole() == sourceParticipant.getExperimentalRole());
Assert.assertTrue(
targetParticipant.getExpressedInOrganism() == sourceParticipant.getExpressedInOrganism());
Assert.assertTrue(
targetParticipant.getExperimentalPreparations().iterator().next()
== sourceParticipant.getExperimentalPreparations().iterator().next());
Assert.assertTrue(
targetParticipant.getConfidences().iterator().next()
== sourceParticipant.getConfidences().iterator().next());
Assert.assertTrue(
targetParticipant.getParameters().iterator().next()
== sourceParticipant.getParameters().iterator().next());
Assert.assertTrue(
targetParticipant.getIdentificationMethods().iterator().next()
== sourceParticipant.getIdentificationMethods().iterator().next());
}
