private Table processJournalName(Table table) throws IOException {
ScimapsJournalMatcher scimapsJournalMatcher = new ScimapsJournalMatcher();
// Create new output table
Table outputTable = TableUtilities.copyTable(table);
outputTable.addColumn(STANDARDIZED_JOURNAL_NAME_COLUMN, String.class);
int standardizedJournalNameColumnIndex =
outputTable.getColumnNumber(STANDARDIZED_JOURNAL_NAME_COLUMN);
// Retrieve iterator
Iterator<?> rows = outputTable.tuples();
// Process journal names
int rowIndex = 0;
while (rows.hasNext()) {
Tuple row = (Tuple) rows.next();
if (row.canGetString(journalColumnName)) {
String name = row.getString(journalColumnName);
String suggestedName = scimapsJournalMatcher.get(name);
outputTable.setString(rowIndex, standardizedJournalNameColumnIndex, suggestedName);
}
rowIndex++;
}
return outputTable;
}
protected static List<Record> readRecordsFromTable(
Table table,
LogService logger,
String labelColumn,
String startDateColumn,
String endDateColumn,
String sizeByColumn,
String startDateFormat,
String endDateFormat,
String categoryColumn) {
List<Record> workingRecordSet = new ArrayList<Record>();
for (Iterator<?> rows = table.tuples(); rows.hasNext(); ) {
Tuple row = (Tuple) rows.next();
try {
Record newRecord =
new Record(
row,
labelColumn,
startDateColumn,
endDateColumn,
sizeByColumn,
startDateFormat,
endDateFormat,
categoryColumn);
workingRecordSet.add(newRecord);
} catch (InvalidRecordException e) {
logger.log(LogService.LOG_WARNING, "A record was ignored: " + e.getMessage(), e);
}
}
return workingRecordSet;
}
