// ## operation Chemkin(double,double,String)
public Chemkin(double p_rtol, double p_atol, String p_reactorType) {
// #[ operation Chemkin(double,double,String)
if (p_rtol < 0 || p_atol < 0)
throw new InvalidChemkinParameterException("Negative rtol or atol!");
if (p_reactorType == null) throw new NullPointerException();
String dir = System.getProperty("RMG.workingDirectory");
// create the documentTypesDefinitions
File docFile = new File("chemkin/documentTypeDefinitions");
docFile.mkdir();
copyFiles(
dir + "/software/reactorModel/documentTypeDefinitions/reactorInput.dtd",
"chemkin/documentTypeDefinitions/reactorInput.dtd");
copyFiles(
dir + "/software/reactorModel/documentTypeDefinitions/reactorOutput.dtd",
"chemkin/documentTypeDefinitions/reactorOutput.dtd");
rtol = p_rtol;
atol = p_atol;
reactorType = p_reactorType;
}
public void getFilesFromFolder(List filesAndFolders, String savePath) {
// create a File object for the parent directory
File downloadsDirectory = new File(savePath);
// create the folder if needed.
downloadsDirectory.mkdir();
for (int i = 0; i < filesAndFolders.size(); i++) {
Object links = filesAndFolders.get(i);
List linksArray = (ArrayList) links;
if (i == 0) {
for (int j = 0; j < linksArray.size(); j += 2) {
// We've got an array of file urls so download each one to a directory with the folder
// name
String fileURL = linksArray.get(j).toString();
String fileName = linksArray.get(j + 1).toString();
downloadFile(fileURL, savePath, fileName);
progress++;
Message msg = mHandler.obtainMessage();
msg.arg1 = progress;
mHandler.sendMessage(msg);
}
} else if (i == 1) {
// we've got an array of folders so recurse down the levels, extracting subfolders and files
// until we've downloaded everything.
for (int j = 0; j < linksArray.size(); j += 2) {
String folderURL = linksArray.get(j).toString();
String folderName = linksArray.get(j + 1).toString();
String page = getData(folderURL);
List newFilesAndFolders = parsePage(page);
String dlDirPath = savePath + folderName + "/";
getFilesFromFolder(newFilesAndFolders, dlDirPath);
}
}
}
}
public static boolean transform(
File origXmlFileOrDir, File xslFile, File targetDir, String extension) {
logger.logComment(
"Going to transform " + origXmlFileOrDir + " into dir " + targetDir + " using: " + xslFile,
true);
if (!origXmlFileOrDir.exists()) {
GuiUtils.showErrorMessage(
logger,
"Warning, XML file/directory: " + origXmlFileOrDir + " doesn't exist",
null,
null);
return false;
}
if (!xslFile.exists()) {
GuiUtils.showErrorMessage(
logger, "Warning, XSL file: " + xslFile + " doesn't exist", null, null);
return false;
}
if (!targetDir.exists()) {
GuiUtils.showErrorMessage(
logger, "Warning, target directory: " + targetDir + " doesn't exist", null, null);
return false;
}
if (origXmlFileOrDir.isDirectory()) {
logger.logComment("That file is a directory. Converting all of the XML files in it");
File[] files = origXmlFileOrDir.listFiles();
boolean totalSuccess = true;
for (int i = 0; i < files.length; i++) {
if (!files[i].isDirectory()
&& (files[i].getName().endsWith(".xml") || files[i].getName().endsWith(".XML"))) {
boolean partialSuccess = transform(files[i], xslFile, targetDir, extension);
totalSuccess = totalSuccess || partialSuccess;
} else if (files[i].isDirectory() && !GeneralUtils.isVersionControlDir(files[i])) {
File newFolder = new File(targetDir, files[i].getName());
newFolder.mkdir();
logger.logComment(
"Found a sub folder. Going to convert all there into: " + newFolder + "...");
transform(files[i], xslFile, newFolder, extension);
}
}
return totalSuccess;
}
String result = transform(origXmlFileOrDir, xslFile);
String newName = origXmlFileOrDir.getName();
if (newName.endsWith(".xml") || newName.endsWith(".XML")) {
newName = newName.substring(0, newName.length() - 4) + extension;
}
File targetFile = new File(targetDir, newName);
try {
FileWriter fw = new FileWriter(targetFile);
fw.write(result);
fw.close();
} catch (IOException ex) {
GuiUtils.showErrorMessage(logger, "Exception writing to file: " + targetFile, ex, null);
return false;
}
logger.logComment("The result is in " + targetFile + " *************");
return result != null;
}
