/** @author braisted */
public class AnalysisFileView extends javax.swing.filechooser.FileView {
private Icon analysisIcon = GUIFactory.getIcon("analysis16.gif");
/** Creates a new instance of AnalysisFileView */
public AnalysisFileView() {}
public String getName(File f) {
return null; // let the L&F FileView figure this out
}
public String getDescription(File f) {
return null; // let the L&F FileView figure this out
}
public Boolean isTraversable(File f) {
return null; // let the L&F FileView figure this out
}
public String getTypeDescription(File f) {
String extension = getExtension(f);
String type = null;
if (extension != null) {
if (extension.equals("anl")) {
type = "MeV Analysis File";
}
}
return type;
}
public Icon getIcon(File f) {
String extension = getExtension(f);
Icon icon = null;
if (extension != null) {
if (extension.equals("anl")) {
icon = analysisIcon;
}
}
return icon;
}
/** Get the extension of a file. */
private String getExtension(File f) {
String ext = null;
String s = f.getName();
int i = s.lastIndexOf('.');
if (i > 0 && i < s.length() - 1) {
ext = s.substring(i + 1).toLowerCase();
}
return ext;
}
}
/** Adds viewer specific menu items. */
protected void addMenuItems(JPopupMenu menu, ActionListener listener) {
JMenuItem menuItem;
menuItem = new JMenuItem("Zoom In", GUIFactory.getIcon("zoom_in.gif"));
menuItem.setActionCommand(ZOOM_IN);
menuItem.addActionListener(listener);
menu.add(menuItem);
menuItem = new JMenuItem("Zoom Out", GUIFactory.getIcon("zoom_out.gif"));
menuItem.setActionCommand(ZOOM_OUT);
menuItem.addActionListener(listener);
menu.add(menuItem);
menuItem = new JMenuItem("Save Data", GUIFactory.getIcon("save16.gif"));
menuItem.setActionCommand(SAVE_DATA_CMD);
menuItem.addActionListener(listener);
menu.add(menuItem);
menuItem = new JMenuItem("Toggle Gridlines", GUIFactory.getIcon("empty16.gif"));
menuItem.setActionCommand(TOGGLE_GRIDLINES_CMD);
menuItem.addActionListener(listener);
menu.add(menuItem);
menuItemAuto = new JMenuItem("Autoscale Y-Axis", GUIFactory.getIcon("Y_range_expand.gif"));
menuItemAuto.setActionCommand(AUTOSCALE_CMD);
menuItemAuto.addActionListener(listener);
menuItemAuto.setEnabled(false);
menu.add(menuItemAuto);
menuItemSetScale = new JMenuItem("Set Y-Axis", GUIFactory.getIcon("Y_range_expand.gif"));
menuItemSetScale.setActionCommand(SET_SCALE_CMD);
menuItemSetScale.addActionListener(listener);
menu.add(menuItemSetScale);
menuItemFixScale =
new JMenuItem("Fix Y-Axis to Global Range", GUIFactory.getIcon("Y_range_expand.gif"));
menuItemFixScale.setActionCommand(FIX_SCALE_CMD);
menuItemFixScale.addActionListener(listener);
menu.add(menuItemFixScale);
aggGenClusterMenuItem =
new JMenuItem("Aggregate Gene Cluster", GUIFactory.getIcon("empty16.gif"));
aggGenClusterMenuItem.setActionCommand(AGG_GENE_CLUSTER_CMD);
aggGenClusterMenuItem.setEnabled(false);
aggGenClusterMenuItem.addActionListener(listener);
menu.add(aggGenClusterMenuItem);
}
/**
* Creates new form KNNCSearchDialog
*
* @param parent parent frame
* @param table parent table
* @param modal modal selection
*/
public KNNCSearchDialog(javax.swing.JDialog parent, JTable table, int numClasses, boolean modal) {
super(parent, modal);
this.table = table;
this.numClasses = numClasses;
numRows = table.getRowCount();
numCols = table.getColumnCount();
numSearchCols = numCols - (numClasses + 2);
foundRowIndices = new Vector();
initComponents();
this.geneBarContainerLabel.setIcon(GUIFactory.getIcon("dialog_banner2.gif"));
searchButtonGroup = new ButtonGroup();
searchButtonGroup.add(this.selectAllButton);
searchButtonGroup.add(this.selectIncrButton);
this.setSize(250, 200);
this.pack();
this.jComboBox1.setMaximumRowCount(10);
searchStr = null;
this.jComboBox1.setEditable(true);
this.jComboBox1.insertItemAt(new String(""), 0);
this.findButton.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent ae) {
findNextButton.setEnabled(false);
runSearch();
if (foundRowIndices.size() > 0 && selectIncrButton.isSelected())
findNextButton.setEnabled(true);
else findNextButton.setEnabled(false);
}
});
this.findNextButton.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent ae) {
findNext();
}
});
this.closeButton.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent ae) {
foundRowIndices.removeAllElements();
findNextButton.setEnabled(false);
selectAllButton.setSelected(true);
matchCaseChkBox.setSelected(true);
setVisible(false);
}
});
this.jComboBox1.addFocusListener(
new FocusListener() {
public void focusGained(FocusEvent fe) {
findNextButton.setEnabled(false);
findNextButton.repaint();
foundRowIndices.removeAllElements();
}
public void focusLost(FocusEvent fe) {}
});
}
/** This method is called from within the constructor to initialize the dialog. */
private void initComponents() {
buttonGroup1 = new javax.swing.ButtonGroup();
jComboBox1 = new javax.swing.JComboBox();
jLabel2 = new javax.swing.JLabel();
matchCaseChkBox = new javax.swing.JCheckBox();
selectAllButton = new javax.swing.JRadioButton();
selectIncrButton = new javax.swing.JRadioButton();
buttonPanel = new javax.swing.JPanel();
findButton = new javax.swing.JButton();
findNextButton = new javax.swing.JButton();
closeButton = new javax.swing.JButton();
geneBarPanel = new javax.swing.JPanel();
geneBarContainerLabel = new javax.swing.JLabel();
getContentPane().setLayout(new java.awt.GridBagLayout());
java.awt.GridBagConstraints gridBagConstraints1;
setTitle("Search");
setName("Search");
setResizable(false);
addWindowListener(
new java.awt.event.WindowAdapter() {
public void windowClosing(java.awt.event.WindowEvent evt) {
closeDialog(evt);
}
});
jComboBox1.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
jComboBox1ActionPerformed(evt);
}
});
gridBagConstraints1 = new java.awt.GridBagConstraints();
gridBagConstraints1.gridx = 1;
gridBagConstraints1.gridy = 1;
gridBagConstraints1.gridwidth = 2;
gridBagConstraints1.fill = java.awt.GridBagConstraints.HORIZONTAL;
gridBagConstraints1.insets = new java.awt.Insets(10, 10, 10, 10);
getContentPane().add(jComboBox1, gridBagConstraints1);
jLabel2.setText("Find what:");
jLabel2.setForeground(java.awt.Color.black);
gridBagConstraints1 = new java.awt.GridBagConstraints();
gridBagConstraints1.gridx = 0;
gridBagConstraints1.gridy = 1;
gridBagConstraints1.insets = new java.awt.Insets(10, 10, 10, 10);
gridBagConstraints1.anchor = java.awt.GridBagConstraints.EAST;
getContentPane().add(jLabel2, gridBagConstraints1);
matchCaseChkBox.setText("Match Case");
matchCaseChkBox.setFocusPainted(false);
matchCaseChkBox.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
matchCaseChkBoxActionPerformed(evt);
}
});
gridBagConstraints1 = new java.awt.GridBagConstraints();
gridBagConstraints1.gridx = 1;
gridBagConstraints1.gridy = 3;
gridBagConstraints1.insets = new java.awt.Insets(0, 0, 0, 10);
getContentPane().add(matchCaseChkBox, gridBagConstraints1);
selectAllButton.setToolTipText("Select all finds at once.");
selectAllButton.setSelected(true);
selectAllButton.setText("Select All Rows Found");
selectAllButton.setFocusPainted(false);
gridBagConstraints1 = new java.awt.GridBagConstraints();
gridBagConstraints1.gridx = 2;
gridBagConstraints1.gridy = 2;
gridBagConstraints1.anchor = java.awt.GridBagConstraints.WEST;
getContentPane().add(selectAllButton, gridBagConstraints1);
selectIncrButton.setToolTipText("Move throgh finds sequentially.");
selectIncrButton.setText("Select Incrementally");
selectIncrButton.setFocusPainted(false);
gridBagConstraints1 = new java.awt.GridBagConstraints();
gridBagConstraints1.gridx = 2;
gridBagConstraints1.gridy = 3;
gridBagConstraints1.anchor = java.awt.GridBagConstraints.WEST;
getContentPane().add(selectIncrButton, gridBagConstraints1);
findButton.setText("Find");
buttonPanel.add(findButton);
findNextButton.setText("Find Next");
findNextButton.setEnabled(false);
buttonPanel.add(findNextButton);
closeButton.setText("Close");
buttonPanel.add(closeButton);
gridBagConstraints1 = new java.awt.GridBagConstraints();
gridBagConstraints1.gridx = 1;
gridBagConstraints1.gridy = 4;
gridBagConstraints1.gridwidth = 2;
gridBagConstraints1.insets = new java.awt.Insets(10, 0, 0, 0);
getContentPane().add(buttonPanel, gridBagConstraints1);
geneBarContainerLabel.setToolTipText("The Institute for Genomic Research");
geneBarContainerLabel.setIconTextGap(0);
this.geneBarContainerLabel.setIcon(GUIFactory.getIcon("genebar2.gif"));
geneBarPanel.add(geneBarContainerLabel);
gridBagConstraints1 = new java.awt.GridBagConstraints();
gridBagConstraints1.gridx = 0;
gridBagConstraints1.gridy = 0;
gridBagConstraints1.gridwidth = 3;
gridBagConstraints1.fill = java.awt.GridBagConstraints.HORIZONTAL;
gridBagConstraints1.anchor = java.awt.GridBagConstraints.NORTH;
gridBagConstraints1.weightx = 1.0;
getContentPane().add(geneBarPanel, gridBagConstraints1);
pack();
}