@Override
public void importFile(File inFile, IRI documentIRI, Authorizations authorizations)
throws Exception {
if (!inFile.exists()) {
throw new LumifyException("File " + inFile + " does not exist");
}
File inDir = inFile.getParentFile();
FileInputStream inFileIn = new FileInputStream(inFile);
try {
importFile(inFileIn, documentIRI, inDir, authorizations);
} finally {
inFileIn.close();
}
}
protected File findOwlFile(File dir) {
File[] files = dir.listFiles();
if (files == null) {
return null;
}
for (File child : files) {
if (child.isDirectory()) {
File found = findOwlFile(child);
if (found != null) {
return found;
}
} else if (child.getName().toLowerCase().endsWith(".owl")) {
return child;
}
}
return null;
}
@Override
public void writePackage(File file, IRI documentIRI, Authorizations authorizations)
throws Exception {
ZipFile zipped = new ZipFile(file);
if (zipped.isValidZipFile()) {
File tempDir = Files.createTempDir();
try {
LOGGER.info("Extracting: %s to %s", file.getAbsoluteFile(), tempDir.getAbsolutePath());
zipped.extractAll(tempDir.getAbsolutePath());
File owlFile = findOwlFile(tempDir);
importFile(owlFile, documentIRI, authorizations);
} finally {
FileUtils.deleteDirectory(tempDir);
}
} else {
importFile(file, documentIRI, authorizations);
}
}
private void setIconProperty(
Concept concept,
File inDir,
String glyphIconFileName,
String propertyKey,
Authorizations authorizations)
throws IOException {
if (glyphIconFileName != null) {
File iconFile = new File(inDir, glyphIconFileName);
if (!iconFile.exists()) {
throw new RuntimeException("Could not find icon file: " + iconFile.toString());
}
InputStream iconFileIn = new FileInputStream(iconFile);
try {
StreamingPropertyValue value = new StreamingPropertyValue(iconFileIn, byte[].class);
value.searchIndex(false);
value.store(true);
concept.setProperty(
propertyKey, value, OntologyRepository.VISIBILITY.getVisibility(), authorizations);
} finally {
iconFileIn.close();
}
}
}
