/**
* Extract the plane at the different positions and concatenate the Dataset
*
* @param newValue
* @return
*/
private CallbackTask<Void, Void> createSampleImage(File newValue) {
return new CallbackTask<Void, Void>()
.run(
() -> {
try {
File fileTarget = workflowModel.getMapImages().get(newValue);
Dataset datasetTarget = (Dataset) iOService.open(fileTarget.getAbsolutePath());
ImageDisplay imageDisplayTarget = new SilentImageDisplay();
context.inject(imageDisplayTarget);
imageDisplayTarget.display(datasetTarget);
selectPosition(
imageDisplayTarget,
workflowModel.getPositionLeft(),
workflowModel.getPositionRight(),
imageDisplayPaneRight);
Dataset datasetSource = (Dataset) iOService.open(newValue.getAbsolutePath());
ImageDisplay imageDisplaySource = new SilentImageDisplay();
context.inject(imageDisplaySource);
imageDisplaySource.display(datasetSource);
selectPosition(
imageDisplaySource,
workflowModel.getPositionLeft(),
workflowModel.getPositionRight(),
imageDisplayPaneLeft);
} catch (IOException ex) {
Logger.getLogger(ProcessWorkflow.class.getName()).log(Level.SEVERE, null, ex);
}
})
.submit(loadingScreenService);
}
@Override
public void setItem(WorkflowStep t) {
if (configPane == null) {
configPane = new ModuleConfigPane();
context.inject(configPane);
popover.setContentNode(configPane);
// popover.setAnchorLocation(PopupWindow.AnchorLocation.WINDOW_TOP_RIGHT);
popover.setArrowLocation(PopOver.ArrowLocation.RIGHT_TOP);
}
this.step = t;
configPane.configure(step);
titleLabel.setText(step.getModule().getInfo().getTitle());
}
public OpViewer(final Context context) {
super("Op Viewer");
context.inject(this);
// Load the frame size
loadPreferences();
// Top node of the JTree
final DefaultMutableTreeNode top = new DefaultMutableTreeNode("Available Ops");
createNodes(top);
final JTree tree = new JTree(top);
tree.getSelectionModel().setSelectionMode(TreeSelectionModel.SINGLE_TREE_SELECTION);
setDefaultCloseOperation(WindowConstants.DISPOSE_ON_CLOSE);
// Make the JTree scrollable
final JScrollPane pane =
new JScrollPane(
tree,
ScrollPaneConstants.VERTICAL_SCROLLBAR_AS_NEEDED,
ScrollPaneConstants.HORIZONTAL_SCROLLBAR_AS_NEEDED);
setContentPane(pane);
try {
if (SwingUtilities.isEventDispatchThread()) {
pack();
} else {
SwingUtilities.invokeAndWait(
new Runnable() {
@Override
public void run() {
pack();
}
});
}
} catch (final Exception ie) {
/* ignore */
}
setLocationRelativeTo(null); // center on screen
requestFocus();
}
public void dummySegmentation() {
List<Dataset> predictDataset = new ArrayList<>(imgDatasets.size());
INDArray predict = dummyClassification();
int currIdx = 0;
for (int ds = 0; ds < imgDatasets.size(); ds++) {
List<List<int[]>> profilesSet = testData.get(ds).getProfiles();
predictDataset.add(imagePlaneService.createEmptyPlaneDataset(imgDatasets.get(ds)));
Dataset currDataset = predictDataset.get(ds);
RandomAccess<RealType<?>> randomAccess = currDataset.randomAccess();
for (List<int[]> p : profilesSet) {
for (int i = 0; i < p.size(); i++) {
randomAccess.setPosition(p.get(i)[0], 0);
randomAccess.setPosition(p.get(i)[1], 1);
double value = predict.getRow(currIdx).getDouble(i);
if (value != 0) randomAccess.get().setReal(value);
}
}
Overlay[] overlays = BinaryToOverlay.transform(context, currDataset, true);
// List<Overlay> overlayList = Arrays.asList(BinaryToOverlay.transform(context,
// currDataset, true));
overlayStatService.setRandomColor(Arrays.asList(overlays));
ImageDisplay display = new DefaultImageDisplay();
context.inject(display);
display.display(currDataset);
for (Overlay o : overlays) {
display.display(o);
}
uis.show(display);
}
}
public ScriptREPL(final Context context, final OutputStream out) {
context.inject(this);
this.out = out instanceof PrintStream ? (PrintStream) out : new PrintStream(out);
}
@Override
public void setContext(final Context context) {
context.inject(this);
}