/**
* GraphicalLine values are added to the pathway element model.
*
* @param mPointsDoubles
* @param relX
* @param relY
* @param startGraphRef
* @param endGraphRef
* @param pointGraphId
* @param arrowHead
* @param anchorList
* @param color
* @param lnThickness
* @param lineStyle
* @param connectorType
* @param zOrder
* @param groupRef
* @param bioPaxRefs
* @param graphId
* @param type
* @return pwElt
*/
public static PathwayElement createGraphicalLine(
List<Double> mPointsDoubles,
double relX,
double relY,
String startGraphRef,
String endGraphRef,
String pointGraphId,
String arrowHead,
List<String> anchorList,
Color color,
int lnThickness,
int lineStyle,
String connectorType,
int zOrder,
String groupRef,
List<String> bioPaxRefs,
String graphId,
String type) {
// !!! not done yet
// create pathwayElement line
PathwayElement pwElt = PathwayElement.createPathwayElement(ObjectType.GRAPHLINE);
pwElt.setStartGraphRef(startGraphRef);
pwElt.setEndGraphRef(endGraphRef);
pwElt.setGraphId(graphId);
pwElt.setColor(color);
pwElt.setLineThickness(lnThickness);
pwElt.setLineStyle(lineStyle);
pwElt.setZOrder(zOrder);
pwElt.setGroupRef(groupRef);
pwElt.setGraphId(graphId);
pwElt.setEndLineType(LineType.fromName(arrowHead));
// add MPoints
addLineType(pwElt, connectorType, mPointsDoubles);
// add Anchor
if (anchorList.size() > 0) {
createAnchor(pwElt, anchorList);
}
if (bioPaxRefs.size() > 0) {
for (int i = 0; i < bioPaxRefs.size(); i++) {
pwElt.addBiopaxRef(bioPaxRefs.get(i));
}
}
return null;
}
/**
* Line values are added to the pathway element model.
*
* @param mPointsDoubles
* @param startGraphId
* @param endGraphId
* @param zOrder
* @param lnThickness
* @param connectorType
* @param arrowHead
* @param anchorList
* @param startDataNodeId
* @param endDataNodeId
* @param startRelX
* @param startRelY
* @param endRelX
* @param endRelY
* @return pwElt
*/
public static PathwayElement createLine(
List<Double> mPointsDoubles,
String startGraphId,
String endGraphId,
Integer zOrder,
Double lnThickness,
String connectorType,
String arrowHead,
List<String> anchorList,
GraphIdContainer startDataNodeId,
GraphIdContainer endDataNodeId,
Double startRelX,
Double startRelY,
Double endRelX,
Double endRelY) {
// create pathwayElement line
PathwayElement pwElt = PathwayElement.createPathwayElement(ObjectType.LINE);
// set graph line variables
if (mPointsDoubles.isEmpty()) {
System.out.println("No mPoints for line!!");
throw new EmptyStackException();
}
if (!(startGraphId.equals(""))) pwElt.setStartGraphRef(startGraphId);
else {
System.out.println("No startGraphId for line!!");
throw new EmptyStackException();
}
if (!(endGraphId.equals(""))) pwElt.setEndGraphRef(endGraphId);
else {
System.out.println("No endGraphId for line!!");
throw new EmptyStackException();
}
if (zOrder != -1) pwElt.setZOrder(zOrder);
if (lnThickness != null) pwElt.setLineThickness(lnThickness);
if (arrowHead != null) pwElt.setEndLineType(LineType.fromName(arrowHead));
if (startRelX == null) {
System.out.println("No relX 1 for line!!");
throw new EmptyStackException();
}
if (endRelX == null) {
System.out.println("No relX 2 for line!!");
throw new EmptyStackException();
}
if (startRelY == null) {
System.out.println("No relY 1 for line!!");
throw new EmptyStackException();
}
if (endRelY == null) {
System.out.println("No no relY 2 for line!!");
throw new EmptyStackException();
}
// add MPoints
addLineType(pwElt, connectorType, mPointsDoubles);
// add Anchor
if (anchorList.size() > 0) createAnchor(pwElt, anchorList);
// bind on the correct place
MPoint startLine = pwElt.getMStart();
MPoint endLine = pwElt.getMEnd();
if (startDataNodeId.equals("")) {
startLine.linkTo(startDataNodeId, startRelX, startRelY);
}
if (startDataNodeId.equals("")) {
endLine.linkTo(endDataNodeId, endRelX, endRelY);
}
return pwElt;
}
