public Collection<RenderingMode> getRenderingModes(ReportDefinition definition) {
List<RenderingMode> ret = new ArrayList<RenderingMode>();
if (definition.getName().contains("Appointment")) {
ret.add(new RenderingMode(this, this.getLabel(), this.getLabel(), Integer.MAX_VALUE - 5));
}
return ret;
}
@Override
public boolean canRender(ReportDefinition reportDefinition) {
if (reportDefinition.getName().contains("Appointment")) {
return true;
}
return false;
}
private void createDataSetDefinition(ReportDefinition reportDefinition) {
// Create new dataset definition
RowPerPatientDataSetDefinition dataSetDefinition = new RowPerPatientDataSetDefinition();
dataSetDefinition.setName("Chemotherapy Daily Patient List");
dataSetDefinition.addFilter(
Cohorts.createInProgramParameterizableByDate("Oncology", oncologyProgram),
ParameterizableUtil.createParameterMappings("onDate=${endDate}"));
SortCriteria sortCriteria = new SortCriteria();
sortCriteria.addSortElement("familyName", SortDirection.ASC);
dataSetDefinition.setSortCriteria(sortCriteria);
dataSetDefinition.addParameter(new Parameter("endDate", "Monday", Date.class));
// Add Columns
dataSetDefinition.addColumn(
RowPerPatientColumns.getFirstNameColumn("givenName"), new HashMap<String, Object>());
dataSetDefinition.addColumn(
RowPerPatientColumns.getMiddleNameColumn("middleName"), new HashMap<String, Object>());
dataSetDefinition.addColumn(
RowPerPatientColumns.getFamilyNameColumn("familyName"), new HashMap<String, Object>());
dataSetDefinition.addColumn(RowPerPatientColumns.getIMBId("id"), new HashMap<String, Object>());
dataSetDefinition.addColumn(
RowPerPatientColumns.getDrugRegimenInformationParameterized("regimen", false, false),
ParameterizableUtil.createParameterMappings("asOfDate=${endDate},untilDate=${endDate}"));
dataSetDefinition.addColumn(
RowPerPatientColumns.getDrugRegimenInformationParameterized(
"regimenDrugs", chemotherapy, false, true),
ParameterizableUtil.createParameterMappings("asOfDate=${endDate},untilDate=${endDate}"));
dataSetDefinition.addColumn(
RowPerPatientColumns.getStateOfPatient("diagnosis", oncologyProgram, diagnosis, null),
new HashMap<String, Object>());
dataSetDefinition.addColumn(
RowPerPatientColumns.getMostRecent("telephone", telephone, null),
new HashMap<String, Object>());
dataSetDefinition.addColumn(
RowPerPatientColumns.getMostRecent("telephone2", telephone2, null),
new HashMap<String, Object>());
dataSetDefinition.addColumn(
RowPerPatientColumns.getAccompRelationship("accompagnateur"),
new HashMap<String, Object>());
Map<String, Object> mappings = new HashMap<String, Object>();
mappings.put("endDate", "${endDate}");
reportDefinition.addDataSetDefinition("dataSet", dataSetDefinition, mappings);
}
private ReportDefinition createReportDefinition() {
ReportDefinition reportDefinition = new ReportDefinition();
reportDefinition.setName("ONC-Chemotherapy Daily Expected Patient List");
UpcomingChemotherapyCohortDefinition baseCohort = new UpcomingChemotherapyCohortDefinition();
baseCohort.setChemotherapyIndication(chemotherapy);
baseCohort.addParameter(new Parameter("asOfDate", "asOfDate", Date.class));
baseCohort.addParameter(new Parameter("untilDate", "untilDate", Date.class));
reportDefinition.setBaseCohortDefinition(
baseCohort,
ParameterizableUtil.createParameterMappings("asOfDate=${endDate},untilDate=${endDate}"));
reportDefinition.addParameter(new Parameter("endDate", "Date", Date.class));
createDataSetDefinition(reportDefinition);
h.saveReportDefinition(reportDefinition);
return reportDefinition;
}
/** Tests that the Report and associated ReportDesigns are successfully saved */
@Test
public void shouldSetupReport() throws Exception {
List<ReportDefinition> l = getReportDefinitionService().getDefinitions(getReportName(), true);
Assert.assertEquals(0, l.size());
ReportDefinition reportDefinition = setupReport();
Assert.assertEquals(getReportName(), reportDefinition.getName());
ReportService rs = Context.getService(ReportService.class);
List<ReportDesign> designs = rs.getReportDesigns(reportDefinition, null, false);
Assert.assertEquals(getReportDesignNames().size(), designs.size());
int numMatches = 0;
for (ReportDesign rd : designs) {
if (getReportDesignNames().contains(rd.getName())) {
numMatches++;
}
}
Assert.assertEquals(getReportDesignNames().size(), numMatches);
}
@Test
public void test() throws Exception {
ReportDefinition rd = builder.build(report);
// Run report on all patients for June 2012
EvaluationContext context =
ReportingTestUtils.reportingContext(
Arrays.asList(2, 6, 7, 8, 999),
TestUtils.date(2012, 6, 1),
TestUtils.date(2012, 6, 30));
ReportData data = Context.getService(ReportDefinitionService.class).evaluate(rd, context);
// ReportingTestUtils.printReport(data);
Assert.assertThat(data.getDataSets().size(), is(1));
// Check that report definition can be serialized/de-serialized
Context.getService(ReportDefinitionService.class).saveDefinition(rd);
Context.getService(ReportDefinitionService.class).getDefinition(rd.getId());
}
@RequestMapping(method = RequestMethod.POST)
public void process(
final @RequestParam(required = false, value = "cohort") Integer cohortId,
final @RequestParam(required = true, value = "template") MultipartFile template,
final HttpServletResponse response)
throws IOException, EvaluationException {
EvaluationContext context = new EvaluationContext();
context.addParameterValue("currentDate", new Date());
if (cohortId != null) {
context.setBaseCohort(Context.getCohortService().getCohort(cohortId));
}
PatientDataSetDefinition definition = new PatientDataSetDefinition();
definition.addColumn(
"id", new PatientIdDataDefinition(), StringUtils.EMPTY, new ObjectFormatter());
ListConverter listConverter = new ListConverter();
listConverter.setMaxNumberOfItems(1);
PatientIdentifierDataDefinition preferredIdentifier = new PatientIdentifierDataDefinition();
preferredIdentifier.addType(Context.getPatientService().getPatientIdentifierType(1));
definition.addColumn("identifier", preferredIdentifier, StringUtils.EMPTY, listConverter);
definition.addColumn(
"name",
new PreferredNameDataDefinition(),
StringUtils.EMPTY,
new ObjectFormatter("{familyName}, {givenName}"));
AgeDataDefinition ageOnDate = new AgeDataDefinition();
ageOnDate.addParameter(new Parameter("effectiveDate", "effective date", Date.class));
definition.addColumn("age", ageOnDate, "effectiveDate=${currentDate}", new AgeConverter());
definition.addColumn(
"birthdate",
new BirthdateDataDefinition(),
StringUtils.EMPTY,
new BirthdateConverter("dd-MMM-yyyy"));
definition.addColumn(
"gender", new GenderDataDefinition(), StringUtils.EMPTY, new ObjectFormatter());
ReportDefinition reportDefinition = new ReportDefinition();
reportDefinition.setName("Test Report");
reportDefinition.addDataSetDefinition("PatientDataSetDefinition", definition, null);
final ReportDesign design = new ReportDesign();
design.setName("Test Report Design With Excel Template Renderer");
design.setReportDefinition(reportDefinition);
design.setRendererType(ExcelTemplateRenderer.class);
Properties properties = new Properties();
properties.put("repeatingSections", "sheet:1,dataset:PatientDataSetDefinition");
design.setProperties(properties);
ReportDesignResource resource = new ReportDesignResource();
resource.setName("excel-template.xls");
InputStream inputStream = template.getInputStream();
resource.setContents(IOUtils.toByteArray(inputStream));
IOUtils.closeQuietly(inputStream);
design.addResource(resource);
ExcelTemplateRenderer renderer =
new ExcelTemplateRenderer() {
public ReportDesign getDesign(String argument) {
return design;
}
};
ReportDefinitionService rs = Context.getService(ReportDefinitionService.class);
ReportData data = rs.evaluate(reportDefinition, context);
CsvReportRenderer csvReportRenderer = new CsvReportRenderer();
csvReportRenderer.render(data, "output:csv", System.out);
File file = File.createTempFile("excel", "summary");
BufferedOutputStream bufferedOutputStream =
new BufferedOutputStream(new FileOutputStream(file));
renderer.render(data, "output:xls", bufferedOutputStream);
bufferedOutputStream.close();
response.setHeader("Content-Disposition", "attachment; filename=patient-summary.xls");
response.setContentType("application/vnd.ms-excel");
response.setContentLength((int) file.length());
FileCopyUtils.copy(new FileInputStream(file), response.getOutputStream());
if (file.delete()) log.info("Temporary file deleted!");
}
@Override
public ReportDefinition getReportDefinition() {
String nullString = null;
ObjectFormatter nullStringConverter = new ObjectFormatter();
MohCoreService service = Context.getService(MohCoreService.class);
ReportDefinition report = new PeriodIndicatorReportDefinition();
report.setName("MOH 361A Report");
// set up the DSD
PatientDataSetDefinition dsd = new PatientDataSetDefinition();
dsd.setName("allPatients");
// set up parameters
Parameter facility = new Parameter();
facility.setName("facility");
facility.setType(MOHFacility.class);
// add to report and data set definition
report.addParameter(facility);
dsd.addParameter(facility);
// sort by serial number, then by date
dsd.addSortCriteria("Transfer Status", SortCriteria.SortDirection.ASC);
dsd.addSortCriteria("Date Chronic HIV Care Started", SortCriteria.SortDirection.ASC);
dsd.addSortCriteria("Serial Number", SortCriteria.SortDirection.ASC);
// set up the columns ...
// patient id ... until we get this thing working proper
dsd.addColumn("Person ID", new PersonIdDataDefinition(), nullString);
// a. serial number
dsd.addColumn("Serial Number", new SerialNumberDataDefinition(), "facility=${facility}");
// b. date chronic HIV+ care started
EnrollmentDateDataDefinition enrollmentDate = new EnrollmentDateDataDefinition();
dsd.addColumn("Date Chronic HIV Care Started", enrollmentDate, nullString);
// extra column to help understand reason for including in this cohort
dsd.addColumn(
"First Encounter Date At Facility",
new FirstEncounterAtFacilityDataDefinition(),
"facility=${facility}",
new EncounterDatetimeConverter());
// c. Unique Patient Number
PatientIdentifierType pit = service.getCCCNumberIdentifierType();
CohortRestrictedPatientIdentifierDataDefinition cccColumn =
new CohortRestrictedPatientIdentifierDataDefinition("CCC", pit);
cccColumn.setIncludeFirstNonNullOnly(true);
dsd.addColumn("Unique Patient Number", cccColumn, nullString);
// AMRS Universal ID
CohortRestrictedPatientIdentifierDataDefinition uidColumn =
new CohortRestrictedPatientIdentifierDataDefinition(
"AMRS Universal ID", Context.getPatientService().getPatientIdentifierType(8));
uidColumn.setIncludeFirstNonNullOnly(true);
dsd.addColumn("AMRS Universal ID", uidColumn, nullString);
// AMRS Medical Record Number
CohortRestrictedPatientIdentifierDataDefinition mrnColumn =
new CohortRestrictedPatientIdentifierDataDefinition(
"AMRS Medical Record Number", Context.getPatientService().getPatientIdentifierType(3));
mrnColumn.setIncludeFirstNonNullOnly(true);
dsd.addColumn("AMRS Medical Record Number", mrnColumn, nullString);
// d. Patient's Name
dsd.addColumn("Name", new CohortRestrictedPreferredNameDataDefinition(), nullString);
// e1. Date of Birth
dsd.addColumn(
"Date of Birth",
new CohortRestrictedBirthdateDataDefinition(),
nullString,
new BirthdateConverter(MOHReportUtil.DATE_FORMAT));
// e2. Age at Enrollment
MappedData<EnrollmentDateDataDefinition> mappedDef =
new MappedData<EnrollmentDateDataDefinition>();
mappedDef.setParameterizable(enrollmentDate);
mappedDef.addConverter(new DateConverter());
CohortRestrictedAgeAtDateOfOtherDataDefinition ageAtEnrollment =
new CohortRestrictedAgeAtDateOfOtherDataDefinition();
ageAtEnrollment.setEffectiveDateDefinition(mappedDef);
dsd.addColumn("Age at Enrollment", ageAtEnrollment, nullString, new DecimalAgeConverter(2));
// f. Sex
dsd.addColumn("Sex", new CohortRestrictedGenderDataDefinition(), nullString);
// g. Entry point: From where?
PersonAttributeType pat =
Context.getPersonService()
.getPersonAttributeTypeByName(MohEvaluableNameConstants.POINT_OF_HIV_TESTING);
dsd.addColumn(
"Entry Point",
new CohortRestrictedPersonAttributeDataDefinition("entryPoint", pat),
nullString,
new EntryPointConverter());
// h. Confirmed HIV+ Date
dsd.addColumn("Confirmed HIV Date", enrollmentDate, nullString);
// // i. PEP Start / Stop Date
// LogicDataDefinition columnI = new LogicDataDefinition();
// columnI.setLogicQuery("\"MOH PEP Start Stop Date\"");
// dsd.addColumn("PEP Start / Stop Date", columnI, nullString);
//
// // j. Reasons for PEP use:
// LogicDataDefinition columnJ = new LogicDataDefinition();
// columnJ.setLogicQuery("\"MOH Reasons For PEP\"");
// dsd.addColumn("Reasons for PEP Use", columnJ, nullString);
// k. CTX startdate and stopdate:
dsd.addColumn("CTX Start Stop Date", new CtxStartStopDataDefinition(), nullString);
// l. Fluconazole startdate and stopdate
dsd.addColumn(
"Fluconazole Start Stop Date", new FluconazoleStartStopDataDefinition(), nullString);
// m. TB treatment startdate and stopdate
dsd.addColumn("TB Treatment Start Stop Date", new TbStartStopDataDefinition(), nullString);
// n. Pregnancy Yes?, Due date, PMTCT refer
dsd.addColumn(
"Pregnancy EDD and Referral",
new PmtctPregnancyDataDefinition(),
nullString,
new PMTCTDatesConverter());
// o. LTFU / TO / Dead and date when the event occurred
dsd.addColumn("LTFU TO DEAD", new LTFUTODeadDataDefinition(), nullString, nullStringConverter);
// p. WHO clinical Stage and date
dsd.addColumn(
"WHO Clinical Stage",
new FirstWHOStageDataDefinition(),
nullString,
new WHOStageAndDateConverter());
// q. Date medically eligible for ART
EligibilityForARTDataDefinition eligibility = new EligibilityForARTDataDefinition();
dsd.addColumn(
"Date Medically Eligible for ART",
eligibility,
nullString,
new ARVPatientSnapshotDateConverter());
// r. Reason Medically Eligible for ART
dsd.addColumn(
"Reason Medically Eligible for ART",
eligibility,
nullString,
new ARVPatientSnapshotReasonConverter());
// s. Date ART started (Transfer to ART register)
dsd.addColumn("Date ART Started", new DateARTStartedDataDefinition(), nullString);
// additional columns for troubleshooting
LastHIVEncounterDataDefinition lastHIVEncounter = new LastHIVEncounterDataDefinition();
dsd.addColumn(
"Last HIV Encounter Date", lastHIVEncounter, nullString, new EncounterDatetimeConverter());
dsd.addColumn(
"Last HIV Encounter Location",
lastHIVEncounter,
nullString,
new EncounterLocationConverter());
// informative column for the destination clinics
dsd.addColumn(
"Last Return to Clinic Date",
new LastRTCDateDataDefinition(),
nullString,
new ObsValueDatetimeConverter());
// transfer status column (used for sorting, not needed in output)
dsd.addColumn("Transfer Status", new TransferStatusDataDefinition(), nullString);
Map<String, Object> mappings = new HashMap<String, Object>();
mappings.put("facility", "${facility}");
report.addDataSetDefinition(dsd, mappings);
return report;
}
