/**
* Binds data from reference model instance to XML binding classes
*
* @param obj
* @return
* @throws XMLBindingException
*/
public Object bindToXML(Object obj) throws XMLBindingException {
if (obj == null) {
return null;
}
String className = obj.getClass().getSimpleName();
Method[] methods = obj.getClass().getMethods();
try {
Class xmlClass = Class.forName(XML_BINDING_PACKAGE + className.toUpperCase());
// debug code only
if (xmlClass.getClasses().length != 1) {
log.debug("XMLBinding: bindToXML(): xmlClass.getClass()=" + xmlClass.getClass());
log.debug("XMLBinding: bindToXML(): xmlClass.toString()=" + xmlClass.toString());
for (Class clazz : xmlClass.getClasses()) {
log.debug("\t clazz.getClass()=" + clazz.getClass());
log.debug("\t clazz.toString()=" + clazz.toString());
}
}
Class factoryClass = xmlClass.getClasses()[0];
// ES modification: Add xmlOptions containing openehr (default) and xsi namespaces
// Method factoryMethod = factoryClass.getMethod(NEW_INSTANCE, null);
// Changed to pick the method with an XmlOptions parameter instead
Method factoryMethod = factoryClass.getMethod(NEW_INSTANCE, XmlOptions.class);
// First prameter null because it's a static method, see:
// http://java.sun.com/docs/books/tutorial/reflect/member/methodInvocation.html
// Second parameter should be the parameter of XmlObject.Factory.newInstance(XmlOptions
// options)
// see:
// http://xmlbeans.apache.org/docs/2.2.0/reference/org/apache/xmlbeans/XmlObject.Factory.html
//
// Previous code was: Object xmlObj = factoryMethod.invoke(null, null);
Object xmlObj = factoryMethod.invoke(null, xopt);
Map<String, Class> attributes = builder.retrieveAttribute(className);
Set<String> attributeNames = attributes.keySet();
Object attributeValue = null;
Method setterMethod = null;
for (Method method : methods) {
String name = method.getName();
// cause dead-loop
if ("getParent".equals(name)) {
continue; //
}
if (isGetter(name, attributeNames)) {
log.debug("getter: " + name);
if (method.getParameterTypes().length > 0) {
continue;
}
attributeValue = method.invoke(obj, null);
if (attributeValue == null) {
continue;
}
log.debug("value.class: " + attributeValue.getClass());
boolean isList = false;
if (attributeValue.getClass().isArray()) {
Object[] array = (Object[]) attributeValue;
if (array.length == 0) {
continue;
}
Object[] done = new Object[array.length];
for (int i = 0; i < array.length; i++) {
done[i] = bindToXML(array[i]);
}
attributeValue = done;
} else if (ProportionKind.class.equals(attributeValue.getClass())) {
ProportionKind kind = (ProportionKind) attributeValue;
attributeValue = BigInteger.valueOf(kind.getValue());
} else if (isOpenEHRRMClass(attributeValue)) {
attributeValue = bindToXML(attributeValue);
} else if (List.class.isAssignableFrom(attributeValue.getClass())) {
isList = true;
List list = (List) attributeValue;
log.debug("list.size: " + list.size());
String attributeName = getAttributeNameFromGetter(name);
setterMethod = findSetter(attributeName, xmlClass, isList);
Method addNew = findAddNew(attributeName, xmlClass);
log.debug("setter: " + setterMethod.getName() + ", xmlClass: " + xmlClass);
for (int i = 0, j = list.size() - 1; i <= j; i++) {
Object value = list.get(i);
Object[] array = new Object[2];
addNew.invoke(xmlObj, null);
array[0] = new Integer(i);
array[1] = bindToXML(value);
setterMethod.invoke(xmlObj, array);
log.debug("list.member value set!!!!");
}
}
if (!isList) {
String attributeName = getAttributeNameFromGetter(name);
log.debug(
"attribute: "
+ attributeName
+ ", value("
+ attributeValue
+ "), "
+ "type: "
+ attributeValue.getClass());
// TODO fix for mismatched attribute name in XSD and RM
if ("nullFlavor".equals(attributeName)) {
attributeName = "nullFlavour";
}
// skip function according to specs
if ("isMerged".equals(attributeName)) {
continue;
}
setterMethod = findSetter(attributeName, xmlClass, isList);
if (setterMethod == null) {
log.error(
"failed to find setterMethod for attribute: "
+ attributeName
+ " with type: "
+ xmlClass);
continue;
}
// special handling deals with 'real' typed
// attributes in specs but typed 'float' in xsd
String setter = setterMethod.getName();
if ("setAccuracy".equals(setter)
|| "setDenominator".equals(setter)
|| "setNumerator".equals(setter)) {
Double d = (Double) attributeValue;
attributeValue = d.floatValue();
}
log.debug(
"setter: "
+ setterMethod.getName()
+ ", xmlClass: "
+ xmlClass
+ ", attributeValue: "
+ attributeValue
+ ", attributeValue.class: "
+ attributeValue.getClass());
setterMethod.invoke(xmlObj, attributeValue);
}
}
}
return xmlObj;
} catch (Exception e) {
e.printStackTrace();
throw new XMLBindingException(
"exception caught when bind obj to " + className + ", " + e.getMessage());
}
}
/**
* Construct an instance of RM class of given name and values.
*
* <p>If the input is a string, and the required attribute is some other types (integer, double
* etc), it will be converted into right type. if there is any error during conversion,
* AttributeFormatException will be thrown.
*
* @param rmClassName
* @param valueMap
* @return created instance
* @throws RMObjectBuildingException
*/
public RMObject construct(String rmClassName, Map<String, Object> valueMap)
throws RMObjectBuildingException {
Class rmClass = retrieveRMType(rmClassName);
// replace underscore separated names with camel case
Map<String, Object> filteredMap = new HashMap<String, Object>();
for (String name : valueMap.keySet()) {
filteredMap.put(toCamelCase(name), valueMap.get(name));
}
Constructor constructor = fullConstructor(rmClass);
Map<String, Class> typeMap = attributeType(rmClass);
Map<String, Integer> indexMap = attributeIndex(rmClass);
Map<String, Attribute> attributeMap = attributeMap(rmClass);
Object[] valueArray = new Object[indexMap.size()];
for (String name : typeMap.keySet()) {
Object value = filteredMap.get(name);
if (!typeMap.containsKey(name) || !attributeMap.containsKey(name)) {
throw new RMObjectBuildingException("unknown attribute " + name);
}
Class type = typeMap.get(name);
Integer index = indexMap.get(name);
Attribute attribute = attributeMap.get(name);
if (index == null || type == null) {
throw new RMObjectBuildingException("unknown attribute \"" + name + "\"");
}
// system supplied value
if (attribute.system()) {
SystemValue sysvalue = SystemValue.fromId(name);
if (sysvalue == null) {
throw new RMObjectBuildingException("unknonw system value" + "\"" + name + "\"");
}
value = systemValues.get(sysvalue);
if (value == null) {
throw new AttributeMissingException(
"missing value for "
+ "system attribute \""
+ name
+ "\" in class: "
+ rmClass
+ ", with valueMap: "
+ valueMap);
}
}
// check required attributes
if (value == null && attribute.required()) {
log.info(attribute);
throw new AttributeMissingException(
"missing value for "
+ "required attribute \""
+ name
+ "\" of type "
+ type
+ " while constructing "
+ rmClass
+ " with valueMap: "
+ valueMap);
}
// enum
else if (type.isEnum() && !value.getClass().isEnum()) {
// OG added
if (type.equals(ProportionKind.class))
value = ProportionKind.fromValue(Integer.parseInt(value.toString()));
else value = Enum.valueOf(type, value.toString());
}
// in case of null, create a default value
else if (value == null) {
value = defaultValue(type);
}
// in case of string value, convert to right type if necessary
else if (value instanceof String) {
String str = (String) value;
try {
// for DvCount
if (type.equals(int.class)) {
value = Integer.parseInt(str);
// for DvQuantity
} else if (type.equals(double.class)) {
value = Double.parseDouble(str);
// for DvProportion.precision
} else if (type.equals(Integer.class)) {
value = new Integer(str);
}
} catch (NumberFormatException e) {
throw new AttributeFormatException(
"wrong format of " + "attribute " + name + ", expect " + type);
}
// deal with mismatch between array and list
} else if (type.isAssignableFrom(List.class) && value.getClass().isArray()) {
Object[] array = (Object[]) value;
List list = new ArrayList();
for (Object o : array) {
list.add(o);
}
value = list;
// deal with mismatch between array and set
} else if (type.isAssignableFrom(Set.class) && value.getClass().isArray()) {
Object[] array = (Object[]) value;
Set set = new HashSet();
for (Object o : array) {
set.add(o);
}
value = set;
}
// check type
else if (value != null && !type.isPrimitive()) {
try {
type.cast(value);
} catch (ClassCastException e) {
throw new RMObjectBuildingException(
"Failed to construct: "
+ rmClassName
+ ", value for attribute '"
+ name
+ "' has wrong type, expected \""
+ type
+ "\", but got \""
+ value.getClass()
+ "\"");
}
}
valueArray[index] = value;
}
Object ret = null;
try {
// OG added hack
if (rmClassName.equalsIgnoreCase("DVCOUNT")) {
log.debug("Fixing DVCOUNT...");
for (int i = 0; i < valueArray.length; i++) {
Object value = valueArray[i];
if (value != null && value.getClass().equals(Float.class))
valueArray[i] = Double.parseDouble(value.toString());
else if (value != null && value.getClass().equals(Long.class))
valueArray[i] = Integer.parseInt(value.toString());
}
}
ret = constructor.newInstance(valueArray);
} catch (Exception e) {
if (log.isDebugEnabled()) {
e.printStackTrace();
}
log.debug("failed in constructor.newInstance()", e);
if (stringParsingTypes.contains(rmClassName)) {
throw new AttributeFormatException("wrong format for type " + rmClassName);
}
throw new RMObjectBuildingException(
"failed to create new instance of "
+ rmClassName
+ " with valueMap: "
+ toString(valueMap)
+ ", cause: "
+ e.getMessage());
}
return (RMObject) ret;
}
